3300016814: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with artificial seawater, 25 C, 31 psu salinity and 699 ?mol photons light - Symbiodinium kawagutii CCMP 2468 (MMETSP0134_2)

Overview

Basic Information

• IMG/M Taxon OID: 3300016814
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211992 | Ga0186280
• Sample Name: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with artificial seawater, 25 C, 31 psu salinity and 699 ?mol photons light - Symbiodinium kawagutii CCMP 2468 (MMETSP0134_2)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3409551
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 21.25
  • Long. (^o): -158.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000085	Metagenome / Metatranscriptome	2467	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F009535	Metagenome / Metatranscriptome	316	Y
F017489	Metagenome / Metatranscriptome	240	Y
F018723	Metagenome / Metatranscriptome	233	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186280_100990	All Organisms → cellular organisms → Eukaryota → Sar	780
Ga0186280_101346	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	689
Ga0186280_102101	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	549

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186280_100732	Ga0186280_1007321	F000241	MARPVLLPVLGVVAAVYTASLAFVGAPQGAPRVSKVPARVSAEYLERLGPKDSDVPFDPAAATGPGAAVEFKKRPFGILRYQPGQGGKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVTSINGANVQTEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAEPAAAPLAVQFNSIPGYVYKGAELKEDGQDGFAR
Ga0186280_100990	Ga0186280_1009901	F009535	MLSTRSAFSREKMARGSLLPLLAAVGLVCLATRVLDTVFVGAPTSRGRSSVVPRSVGVDYLLRNGPKDADPPLINTATAAGPAHEVTFKKRPFGIARYAPGSTGTGAVVMEVTPKSRYPGDPQGQAFVAGVQPGWVVKSVNGQDVTGVPFESIMESLDDEVLDPVAALSLNLKESGTVTNFDSSTQADKSYGAVGESTFQFGGGQKAELPITVTYVEQR
Ga0186280_101346	Ga0186280_1013461	F018723	TSLTGCSLPLGPVMPDKKEASSKKGKEPFTSQYEVKDVFPHFCDRKTKLLALQDVPYVLRAMGLTIYVDEEKGIREQLEKVDGMGKPVSLQTMQSWVEEHGKNYVKSYDDAFSAVGTLLHEGIIGDPSGRVQIPFLRHLVSEVGDKIKLDTFDKIIKGGDSAVAVGIKGDSCSLDEFLTFLQK
Ga0186280_101783	Ga0186280_1017832	F000085	SLASLVWTAGLVSAQDWPTCQEENIVIRNAGRALFTNLQGFGATVGCFQDDCQNTDKFVASSIESCTKVCQSLPECEFWVWGQEEGEQKCWFRLGDDGREAGEGWISGGRGCHPPEQQAIVMGNFDCWIDGFNYDTCCDPKFGPSGNSQCWDGVFNYDRCCFPKEEL
Ga0186280_102101	Ga0186280_1021011	F017489	WLLGTYPLGRPLSEGWRFMFTVSFFARIGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQNK