3300016784: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 244 ?mol photons light - Isochrysis sp. CCMP 1324 (MMETSP1131)

Overview

Basic Information

• IMG/M Taxon OID: 3300016784
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211868 | Ga0186156
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 244 ?mol photons light - Isochrysis sp. CCMP 1324 (MMETSP1131)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9924345
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	1
All Organisms → cellular organisms → Eukaryota → Haptista	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024700	Metagenome / Metatranscriptome	204	Y
F027998	Metagenome / Metatranscriptome	193	Y
F098706	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186156_103673	All Organisms → cellular organisms → Eukaryota	867
Ga0186156_105868	All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	645
Ga0186156_106189	All Organisms → cellular organisms → Eukaryota → Haptista	615

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186156_103673	Ga0186156_1036731	F098706	LYQSVPSRSLAMLSVSFFALAANRAEVSTGNLRGENKFDNLKATWDKSVSIGDFKTLVKAKYDYNANRDFLKEVSISGDLIEAGNADDVGVGYELTRDFSNRNTNVRLTATSRGYSLSAEYDPNEQLREVGVSREVEVGDYKVDVQPTWLVKAKAARVKLISALNNGKDRVSAQFDYDVDGQQAKDVELGFERTLEEGKVLSASFRPDKSDLEVSLEDSTFESGATWTATANVALDSDPSNLLDAARVTLKRSWGW
Ga0186156_105868	Ga0186156_1058681	F024700	PVAAHGRVGLMAASVTGLRAPSAKGRRQGPYAGMDLSAVVSTLESHWVVLEAELAEIKKDYVTMRSFTRKYGEYWSRSLATLRKLRVEKENLLKEIKFQMELFNLHIQQGRDLCYKLSQMASTIKTQPQHSTQQLSIEVVSPILANAQNPLAVSRHPND
Ga0186156_106189	Ga0186156_1061893	F027998	DLTILSVVLTNTSAAQIGTITTTTAKITLLKNALNDGVIRFNLI