3300016744: Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1

Overview

Basic Information

• IMG/M Taxon OID: 3300016744
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046201 | Gp0051763 | Ga0183099
• Sample Name: Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 262171514
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lawrence Berkeley National Laboratory, California, USA
• Coordinates
  • Lat. (^o): 37.8754404
  • Long. (^o): -122.2477251
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006680	Metagenome / Metatranscriptome	367	Y
F015240	Metagenome / Metatranscriptome	256	Y
F015966	Metagenome / Metatranscriptome	250	Y
F016215	Metagenome / Metatranscriptome	249	Y
F019904	Metagenome	227	N
F033667	Metagenome / Metatranscriptome	176	Y
F035101	Metagenome / Metatranscriptome	173	Y
F092386	Metagenome / Metatranscriptome	107	N
F092812	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0183099_1207194	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	651
Ga0183099_1239629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	632
Ga0183099_1258248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709
Ga0183099_1275647	Not Available	545
Ga0183099_1314876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601
Ga0183099_1320618	Not Available	630
Ga0183099_1338414	All Organisms → cellular organisms → Bacteria	525
Ga0183099_1372256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	690

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0183099_1014973	Ga0183099_10149732	F033667	MILLVTSNDRRVECGVVLERAVGESVEVCESVRKAAARLRNNEYSAVIMDDPMVEADGEALESLLNNLGLAIPVYVNLAVSNADRIARELRVAQRRNRESRMIAVRAAESQLRSEIRDAVTGILLSTELAMTTPDMPMDALEKLTSVCQLASNIRSRLEVVN
Ga0183099_1207194	Ga0183099_12071941	F006680	MKISKFLLSVLVVFATVALIAPQQVEAIIVDGRVSGQTVFTGSGTITESNGLNSNGISSNGISGSVINELDFNGQNFPHGPLSVTGGTGDFIPFVGSQATFNLAIRWTGSGSSVTLLDVA
Ga0183099_1239629	Ga0183099_12396292	F015240	MATKADFTEDEWKALQRGVTGAGTLVSVSHRDFTDSFGEASALAKHLSEQQN
Ga0183099_1258248	Ga0183099_12582481	F092812	EQLGSHFGFHGQRVESRAELESALQSALAATKGGKTAILNVLVSR
Ga0183099_1258248	Ga0183099_12582482	F092812	LGSHFGFHGQRVESRAELESALQSALAATKGGKTAILNVLVSR
Ga0183099_1275647	Ga0183099_12756472	F035101	MDAKTRHLVLLAGLSLFCAIFAWTADHVVLSSVFLVLGAVAMLGAAERHWR
Ga0183099_1314876	Ga0183099_13148761	F016215	MINRRNAVMGWAVWKVAKRVGRKKARGAAPSVEGGKPNKSLIAVVVAALAGASAFLRGRRSASD
Ga0183099_1320618	Ga0183099_13206182	F092386	MFERLITAIIMVVAVAIVASGLPLSSISGAGSGALGFFNLPPIF
Ga0183099_1338414	Ga0183099_13384141	F019904	RCATACPKQVRDRLPETLRFERSSAAQSSSQLSPSEFDQIDSYFTPDRLGSFAGEPATKTNASVEAVALECWYYGVAGARGAYQICFENGKLSTKARFGQ
Ga0183099_1372256	Ga0183099_13722561	F015966	MEPSASRSTLSLAGAGSVLIGTTLAVIGVAALVGWLLGNAAYGFLVGAILGIPIGVFMTYRRYRDALS