3300016677: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES072 metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300016677
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0126301 | Gp0197892 | Ga0180053
• Sample Name: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES072 metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5393199
• Sequencing Scaffolds: 6
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002908	Metagenome / Metatranscriptome	521	Y
F006061	Metagenome / Metatranscriptome	382	N
F009205	Metagenome / Metatranscriptome	321	N
F009742	Metagenome / Metatranscriptome	313	N
F010909	Metagenome / Metatranscriptome	297	Y
F018531	Metagenome / Metatranscriptome	234	N
F055418	Metagenome / Metatranscriptome	138	N
F055420	Metagenome / Metatranscriptome	138	Y
F058730	Metagenome / Metatranscriptome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180053_103866	Not Available	538
Ga0180053_107470	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex	531
Ga0180053_108341	Not Available	613
Ga0180053_108995	Not Available	637
Ga0180053_110031	Not Available	630
Ga0180053_111074	Not Available	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180053_102830	Ga0180053_1028301	F010909	GSSFTLYRDLTTEATLGATQMKMLNRLRNTMIEHDFQTRDRQKANLPPSLKTGQITNKPEPDITFNEVIHVDLIKTDSVGSDASASTILSITDHTRTLTRLAVLTDDKINSVATSIWHQWCLPYGNPTTIKSNTGKVWTSKLENRLSKLNQDGPKIICRSEKETFFPEIQQQW
Ga0180053_103866	Ga0180053_1038661	F006061	CLGALYLANAKDIQNRCKFSIGGAQEKIFRLDSNTYVVYSLGKINTNHVCPKAKSISAIQISSGQTVRVNPSCYVRTMDHIITADDSKELEIHSKWLDWTWTLGQLFQQPENDKVTKAIDRLWERIAGRFDADILINELETMTKEAKEEPLTHWIFTTPGAMLGGAVLSLLLLFCCWR
Ga0180053_107470	Ga0180053_1074701	F009742	MPRLLLAFLLSLRLPDIEAKEAVIFEQFGQLAGITAYLHVHVELSISSVEAQLGKYRQLLKQNCDSELSVLNYMLTYVNTSITNFTLKKDYPDRPEDFPEKSMIRQNAKLWYKVAQLHLRDLEDMEESIAILSKSLPVVPNRNTGKIPVQAQYAPPQGAHVV
Ga0180053_107509	Ga0180053_1075091	F058730	MNNDQVIPPVNPVNPVNNDGNDGDGVQVPIHHAQAVQGADGGISLKVEQTKLPEFWGQKEKDSITANAFIQRVDNMMAA
Ga0180053_108341	Ga0180053_1083411	F002908	MANNDDIQVDLNQDQDGQVVQNAPAGAQTTLAFRVDQSKIPEFWGQKSKDTVTAIVFIRKIEDLARTNHWTDTATYANVANGLKGFAREWLFATADMLDWTDAQLTWTNLKPRFQKQFATQTDDKQIIEGLSNLAMGPNETTGELLARITNLMVIIKESYAAYNNKAPEPPTDAQGLGRVGLVENTAKQWTNDTAN
Ga0180053_108739	Ga0180053_1087391	F055418	VEQQLSKYRQLLITKLGTEESIRNFMLGQFTPTPRPGVTTPAPEYLGNFTNSAAATIRANSMLWQRIASLHLRDVDDIEHHISSLRNALPPLPGQNPDQIHVKSPFVPPRANADQLLVHPYPDTHDHLLFAPKDETRKHTSRGLNPYDPHGEERAKSAKSGPITGSTTTSDPASKPKLHGRKKRNPDPVLTSRPLTEEAFDQMVPVRERRGVLGAVALPMAVA
Ga0180053_108995	Ga0180053_1089951	F009205	EVDLFIKGKKFTHPVNVIEELNENIIGIDFIHAHKLTYDVISRKVMFAGAGTNSIMALKNTVLPAMTSTVIKAKFKGTRDEKATYVANICAPRTPMVSGMPSIVNIDENNICNIIVENCAPYDVTLERDDILGVMETETEELVPLTDDFISSVCQDIHNRFPKVKKKRLSRDEVKRRCHLQVPEEFHERYLDILCKHQDALSIDKYDLGLA
Ga0180053_110031	Ga0180053_1100311	F018531	LNVAKLKHFYENVEKSAEKESEAETFNQNFNQSENAHHDFNDIFNKARNEGPVTRAKAKLIKYQDAAQLALLLLKSENDTINSLCDPSKHCGRCESEETYLAESKTLPFQWRQLKLAENRCKQWRLKLMKREAKKINSTEERCHSNVPERFCEPLMKVAYKLLSRDEATFEELTPSEQKLWNSFETDQIYRLLTGEPDTVPEFRFNWYT
Ga0180053_111074	Ga0180053_1110742	F055420	AQGRYYWPKIYVMDDNDAKTVSSIDHEDETRQHSGHIAEISNAHSSPNTRTAALSPDYSGFQ