3300015216: Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Kb

Overview

Basic Information

• IMG/M Taxon OID: 3300015216
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128895 | Gp0209314 | Ga0182875
• Sample Name: Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Kb
• Sequencing Status: Permanent Draft
• Sequencing Center: Laval University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1055569398
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Mat Communities From High Arctic Lakes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Unclassified → Microbial Mat → Microbial Mat Communities From High Arctic Lakes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Kuujjuarapik
• Coordinates
  • Lat. (^o): 55.275009
  • Long. (^o): -77.758484
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006163	Metagenome	380	Y
F009919	Metagenome	311	Y
F016569	Metagenome / Metatranscriptome	246	Y
F021565	Metagenome / Metatranscriptome	218	Y
F022009	Metagenome	216	Y
F022216	Metagenome / Metatranscriptome	215	Y
F023327	Metagenome / Metatranscriptome	210	N
F024422	Metagenome / Metatranscriptome	206	Y
F034114	Metagenome / Metatranscriptome	175	Y
F039953	Metagenome / Metatranscriptome	162	Y
F093403	Metagenome / Metatranscriptome	106	N
F093898	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182875_10000004	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5426
Ga0182875_10000417	All Organisms → cellular organisms → Bacteria	2344
Ga0182875_10000426	All Organisms → cellular organisms → Bacteria → Proteobacteria	2335
Ga0182875_10000862	Not Available	1978
Ga0182875_10006069	Not Available	1145
Ga0182875_10022958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	751
Ga0182875_10025946	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	719
Ga0182875_10032015	Not Available	664
Ga0182875_10044174	All Organisms → cellular organisms → Bacteria → Proteobacteria	583
Ga0182875_10044564	All Organisms → cellular organisms → Bacteria	581
Ga0182875_10052442	All Organisms → cellular organisms → Bacteria	542
Ga0182875_10057220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182875_10000004	Ga0182875_100000044	F023327	MQIDFMCAVVESYIYRMKGAQVKIDRMAVATDQRQMAMLMHAYQIAHGDKKHSNL*
Ga0182875_10000417	Ga0182875_100004173	F009919	MFAANLQYKLNQFVTFAVEQSYYRTRSANTTTTSTGGLPIFRGVPAVSTHNNRFEFATIFTF*
Ga0182875_10000426	Ga0182875_100004263	F093403	MNVLGIQLNAPSLMGLIRMLGFTLAAIALVEMADRLNHGVWANEGSLSFIVGGFSGFLLNEAGADFAKHGWRAFALMIGCAVFVYAVFSLVL*
Ga0182875_10000862	Ga0182875_100008624	F034114	MPVIMREVSVAAGAVNENILSGSAFEFARQNSLVSIGIHQAATGGFATINSGSDVIAEEFAPPIATVYPIIPDNMYFSDVAAAGDRLVVRYRNPTGAALVVRVVCQVTAL*
Ga0182875_10006069	Ga0182875_100060691	F021565	MAIKYYAHFLVDQPEPRGLQEYRGVVELDGQPRPNKGMHEATRIIARNFGRSQQDVKVLQWARLH*
Ga0182875_10022958	Ga0182875_100229582	F022009	VLPLVALLWLAAAGLAANAQSNTYTVEIRPTLNDLDIKIEQVAQASTLVVNLTNNSPTRVRCNVNFDASPQTPVRRTRHINPGQTDSNVLRAQRRWRAGQGPWRRVRRSGV*
Ga0182875_10025946	Ga0182875_100259462	F006163	MARDGRARPGAVIVTVPAYLDAVRLVHGVGPAEMARALRVNPSVLRRWARGTLVPSWKRLRAMTGLWGGSPELLALGAALQRYSRATGVPVDEAVRMLRTGWRNGPGRSAVSRPRDRRQLSLPIGG*
Ga0182875_10032015	Ga0182875_100320152	F039953	AVVLANPINSRGRNRVNNMMPEVALEAEGWGNNMIEAYTGNHIGHRASRKRLKVITAP*
Ga0182875_10044174	Ga0182875_100441742	F022216	MPVAEVPGETGQRRRIRRTTLVLALVALGIYVAFIASGVMQARG*
Ga0182875_10044564	Ga0182875_100445641	F024422	PRIVPTRMMLDYQKGGFPAYDIEPEHGVPVPCALGQPWVNEDTQDTLARLRIPRTDPWGNPLPGEPDDQILARFRPKQ*
Ga0182875_10052442	Ga0182875_100524421	F016569	VHNRAGEYFYNAMCAYHWSKSADGTFIAVAPNMVVGVNDKSNRACLAGRYSSQFIERQYPDNYFSLRTLTHISD*
Ga0182875_10057220	Ga0182875_100572202	F093898	MRCLVARAVNPQMNLLDGLREWNGIATALREPPRRRRRYQGDDWDRFLS*