3300015207: Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Drug W8

Overview

Basic Information

• IMG/M Taxon OID: 3300015207
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121305 | Gp0151712 | Ga0134540
• Sample Name: Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Drug W8
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hong Kong
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 376484438
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:440	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Gut → Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Hong Kong
• Coordinates
  • Lat. (^o): 22.3356
  • Long. (^o): 114.1826
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134540_1097037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:440	662

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134540_1097037	Ga0134540_10970371	F013656	VIFLEKRYKEPNKLEMETTINVLYEENVISVYTNKPDLQKQLCKSIGEPEKEFVKGKSILASRWIIPLNEKSKISKMMLKANIFQL*