3300015048: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_J_MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300015048
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127568 | Gp0198143 | Ga0180013
• Sample Name: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_J_MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 62746559
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → planetary subsurface zone → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Finland: the Olkiluoto Island
• Coordinates
  • Lat. (^o): 61.2418
  • Long. (^o): 21.4803
  • Alt. (m): N/A
  • Depth (m): 410

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072481	Metagenome / Metatranscriptome	121	Y
F096722	Metagenome	104	Y
F098573	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180013_130445	Not Available	574
Ga0180013_130566	All Organisms → cellular organisms → Archaea	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180013_121512	Ga0180013_1215122	F098573	MILPAFVVRYKRYDTDALEKFMTLLFITEDSYRIAGISQALWMDTQLAGTWAALEASAEVAIAPRALWGLVQWVGQLSPAQLNLALGVEPPSHIIEDEKHVTQNGARAYVPIVYAPKEALIWWIDYIQSVSADALQASLERFKALSDRLSQKRSAERLWMVGMPLKKP*
Ga0180013_130445	Ga0180013_1304451	F096722	MSDEKESYTGPIEQKVNSMMETTGDEISNFTQKGPDVFINETVQDIRILNLNRCILYLAKEIDKLAKSIK*
Ga0180013_130566	Ga0180013_1305661	F072481	ADDAKGRKDGTKPVFRPDFHSEKHVRCKHCGETYTEKEIKLDPKTGKWVCKHHPKCGGVEWHPF*