3300014966: Freshwater microbial mat microbial communities from Canadian High Arctic Lake, Ward Hunt Island, Canada - Sample WHa

Overview

Basic Information

• IMG/M Taxon OID: 3300014966
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128895 | Gp0209085 | Ga0182824
• Sample Name: Freshwater microbial mat microbial communities from Canadian High Arctic Lake, Ward Hunt Island, Canada - Sample WHa
• Sequencing Status: Permanent Draft
• Sequencing Center: Laval University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 817233659
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Mat Communities From High Arctic Lakes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Unclassified → Microbial Mat → Microbial Mat Communities From High Arctic Lakes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Canada: Ward Hunt Island
• Coordinates
  • Lat. (^o): 83.079722
  • Long. (^o): -74.138056
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008147	Metagenome / Metatranscriptome	338	Y
F037916	Metagenome	167	Y
F055342	Metagenome / Metatranscriptome	138	Y
F068999	Metagenome / Metatranscriptome	124	Y
F093152	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182824_10008804	All Organisms → cellular organisms → Bacteria	1758
Ga0182824_10013549	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1393
Ga0182824_10014595	Not Available	1339
Ga0182824_10028401	All Organisms → cellular organisms → Bacteria → Acidobacteria	929
Ga0182824_10030666	All Organisms → cellular organisms → Bacteria → Acidobacteria	891
Ga0182824_10057105	Not Available	615

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182824_10008804	Ga0182824_100088043	F093152	SGTRYSHNYASLRSLVNLVTKDWNARGLMPTGYRLTICPPVVFNLIGTVFHPEWSRTESLELGFYRDSGDNAKCYAVGSNAPEDFSYIKEVETESDWAILGFRTALVPE*
Ga0182824_10013549	Ga0182824_100135492	F008147	MSIEEAILDTVRRLPPTQQEQVLRFADGLQREPKITMVPSRDRRREIKWIKDNRTAYADQWVVVEGDRLIAANADGHKAFADAKEAGIDVPFLVHVLQEDSLPFVAGW*
Ga0182824_10014595	Ga0182824_100145951	F037916	GSAVALKRDAQRKPRRDDVETRHKAEIDRLRAVITEITTENLELKKKI*
Ga0182824_10028401	Ga0182824_100284013	F055342	MSKKQRTKYYVRKRIFLNRDLDMRAFAIAIVEDTRHFPNESDGEWKWGEIQLNLGDCYRHVSFDFTMDTKAHRADSLYKIRKIAEIVNAVRDALELEAESINQRQNDQPKVKAKPKAKGAAG*
Ga0182824_10030666	Ga0182824_100306661	F055342	MFLNRDLDMRAFAIGIVEDTRHIPNDDEEGWKWRTIELTLGDCYRQVSFDFDLSSKETRSKSLYKIRRIAEIVNRVCAAIEIEAKSVDERKIVKPKAAPKAKSAAG*
Ga0182824_10057105	Ga0182824_100571051	F068999	MRGSGWLAAVVVAGWSQAALAAEMLPLKQGIYVPVNRPCKGASNAEMLNYRGEKSSFGSAQAACTIVKMTRRGNVFTITDKCVDIRGGGDIEGGPVVVTIASPTGFSKDGERYRYCGPRAQF*