3300014958: Human fecal microbial communities from obese patients in Germany - AS53_24

Overview

Basic Information

• IMG/M Taxon OID: 3300014958
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151593 | Ga0134421
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS53_24
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151400607
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068811	Metagenome	124	N
F078693	Metagenome	116	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134421_1000564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	33449
Ga0134421_1000582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	32534
Ga0134421_1005490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3390
Ga0134421_1026915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	789

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134421_1000564	Ga0134421_100056435	F078693	MVLAPVRGLERFYVKWNCSLLMSKENQKSTSDFDALDPRERGCSPLSDPEGEVETEKS*
Ga0134421_1000582	Ga0134421_100058229	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVLLILNENVSETLCIFSIDKTNCCRI*
Ga0134421_1005490	Ga0134421_10054903	F092227	MNKQKRKRVLRIGCLVLAGVFVLSLLGSILMMLLL*
Ga0134421_1026915	Ga0134421_10269152	F092227	MNEEKRKRFLRVGGLLLAGVFLLSVLGSVVLMLLV*