Sample 3300014955

Overview

Basic Information
IMG/M Taxon OID	3300014955 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121306 \| Gp0151733 \| Ga0134561
Sample Name	Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10025
Sequencing Status	Permanent Draft
Sequencing Center	University of Bologna
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	100540386
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Tanzania
Coordinates	Lat. (^o)	-3.6347588	Long. (^o)	35.0828588	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F047125	Metagenome / Metatranscriptome	150	N
F051935	Metagenome	143	N
F052660	Metagenome	142	N
F067720	Metagenome	125	Y
F068855	Metagenome	124	N
F073574	Metagenome	120	N
F076189	Metagenome	118	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F029444

Metagenome

188

F047125

Metagenome / Metatranscriptome

150

F051935

Metagenome

143

F052660

Metagenome

142

F067720

Metagenome

125

F068855

Metagenome

124

F073574

Metagenome

120

F076189

Metagenome

118

Scaffold	Taxonomy	Length	IMG/M Link
Ga0134561_1000601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	14140	Open in IMG/M
Ga0134561_1001132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	9813	Open in IMG/M
Ga0134561_1001525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8025	Open in IMG/M
Ga0134561_1001969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	6711	Open in IMG/M
Ga0134561_1002042	Not Available	6539	Open in IMG/M
Ga0134561_1012315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1343	Open in IMG/M
Ga0134561_1026658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	731	Open in IMG/M
Ga0134561_1038923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	521	Open in IMG/M
Ga0134561_1040009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	505	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0134561_1000601

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

14140

Open in IMG/M

Ga0134561_1001132

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

9813

Open in IMG/M

Ga0134561_1001525

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

8025

Open in IMG/M

Ga0134561_1001969

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

6711

Open in IMG/M

Ga0134561_1002042

Not Available

6539

Open in IMG/M

Ga0134561_1012315

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1343

Open in IMG/M

Ga0134561_1026658

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

731

Open in IMG/M

Ga0134561_1038923

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

521

Open in IMG/M

Ga0134561_1040009

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

505

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0134561_1000601	Ga0134561_100060114	F068855	MVPTISRCPSSSVPTVEAQGPQVRKSLAPQGLQAEKERGNANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0134561_1001132	Ga0134561_10011328	F026489	MPMMTGGRSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF*
Ga0134561_1001525	Ga0134561_10015254	F047125	MDVVLLLMVLGVMLSGFRAADALDHMRKEILQQEGKRCGWWS*
Ga0134561_1001969	Ga0134561_10019696	F076189	MQCPAGCVICRALFFYFLSLFIKPLLYVEKLQIGTVLPVVSDLYREFAELSARFDLHAIQSAQKQLQMLCNFHENTLGLLIFYTNYAIL*
Ga0134561_1002042	Ga0134561_10020429	F067720	MASTAHEHFVDANKMYAVQEQFRCATKMVCGRFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAACGGGSCSAARCAART*
Ga0134561_1012315	Ga0134561_10123152	F051935	MKEEKRMKRLLGLLMAVMVMMGRISCAVAENANPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDSTYIYFDFVDENQTEWGLVLNLSAAYVSYFRMIYNAEGYGTTEIVFNYDRGMKFQFDAPFYFRLSYDVDPAERYSFVVEDFDLATCPLSMQDFFVPAVVSCGEEGAGLYIMAKQGIQPILVLNDGEMIEAIPQKEKLDWTIVYYQGNYLLRRKIVKWKNKDIAEDFTPLLYLYLDCFRVTIG*
Ga0134561_1026658	Ga0134561_10266582	F029444	MEFSEQLTGFELEDLMPWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDS*
Ga0134561_1038923	Ga0134561_10389232	F073574	MLLPAAVRPYAADVDGTDSRVRCAIVLNGSKDLRIQLCGRLKRGLFGRNQLLADGDVLCVALHQPNGDVPLFDSRCDGYANALDDRQPPAPIPLHPAICPKCRNAAFQLRL
Ga0134561_1040009	Ga0134561_10400092	F052660	CILRVLPENTPEKIGQEWAGTEWTVVKSKIRLCIRNRSYRRFLYGGILMGIALPIPSHHAKSHNFACWWPAAAGHGRSADALPEKSNS*

Scaffold ID

Protein ID

Family

Sequence

Ga0134561_1000601

Ga0134561_100060114

F068855

MVPTISRCPSSSVPTVEAQGPQVRKSLAPQGLQAEKERGNANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*

Ga0134561_1001132

Ga0134561_10011328

F026489

MPMMTGGRSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF*

Ga0134561_1001525

Ga0134561_10015254

F047125

MDVVLLLMVLGVMLSGFRAADALDHMRKEILQQEGKRCGWWS*

Ga0134561_1001969

Ga0134561_10019696

F076189

MQCPAGCVICRALFFYFLSLFIKPLLYVEKLQIGTVLPVVSDLYREFAELSARFDLHAIQSAQKQLQMLCNFHENTLGLLIFYTNYAIL*

Ga0134561_1002042

Ga0134561_10020429

F067720

MASTAHEHFVDANKMYAVQEQFRCATKMVCGRFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAACGGGSCSAARCAART*

Ga0134561_1012315

Ga0134561_10123152

F051935

MKEEKRMKRLLGLLMAVMVMMGRISCAVAENANPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDSTYIYFDFVDENQTEWGLVLNLSAAYVSYFRMIYNAEGYGTTEIVFNYDRGMKFQFDAPFYFRLSYDVDPAERYSFVVEDFDLATCPLSMQDFFVPAVVSCGEEGAGLYIMAKQGIQPILVLNDGEMIEAIPQKEKLDWTIVYYQGNYLLRRKIVKWKNKDIAEDFTPLLYLYLDCFRVTIG*

Ga0134561_1026658

Ga0134561_10266582

F029444

MEFSEQLTGFELEDLMPWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDS*

Ga0134561_1038923

Ga0134561_10389232

F073574

MLLPAAVRPYAADVDGTDSRVRCAIVLNGSKDLRIQLCGRLKRGLFGRNQLLADGDVLCVALHQPNGDVPLFDSRCDGYANALDDRQPPAPIPLHPAICPKCRNAAFQLRL

Ga0134561_1040009

Ga0134561_10400092

F052660

CILRVLPENTPEKIGQEWAGTEWTVVKSKIRLCIRNRSYRRFLYGGILMGIALPIPSHHAKSHNFACWWPAAAGHGRSADALPEKSNS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300014955: Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10025

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences