3300014952: Human fecal microbial communities from obese patients in Germany - AS44_3

Overview

Basic Information

• IMG/M Taxon OID: 3300014952
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151604 | Ga0134432
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS44_3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 110486759
• Sequencing Scaffolds: 2
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F058555	Metagenome	135	N
F078004	Metagenome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134432_100021	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	156526
Ga0134432_100211	Not Available	47746

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134432_100021	Ga0134432_100021181	F058555	MGTKIRFLHIMKSNFDKILTERYIPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVSKHVFLRRRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRRMANKSRKLNRVKMLSKIIFLARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMPISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGRLRLSYKGTIMHIIIAEYFIKDVFLGAKGVEMSKAG*
Ga0134432_100211	Ga0134432_10021141	F032312	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0134432_100211	Ga0134432_10021148	F044555	MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGSLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHYKR*
Ga0134432_102194	Ga0134432_1021947	F078004	LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLVIAVINTFYRLTVNTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*