3300014938: Human fecal microbial communities from obese patients in Germany - AS68_3

Overview

Basic Information

• IMG/M Taxon OID: 3300014938
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151616 | Ga0134444
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS68_3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79538473
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061388	Metagenome	132	N
F090513	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134444_100054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	137189
Ga0134444_101927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	4139

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134444_100054	Ga0134444_10005471	F061388	MPEGGADMGGRGGSSHRQTAGGTAAIQTFLQNAYGANHANAVLAILQNAPAHIRALWEQYAVQFRATNMRRDEGAFYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLFQGIGSDGKAIIRSGSSGGLLGRTAKDELEGHLARMRRQNPNLNRQQAARALVSEANSKYSYRDRSDISDMFEGAGLGIAHPLGAGHGLDYWISRGNSREIFAEIISAEAAHPGSLKAIKEYFPRTYQVYQDMMKARKKR*
Ga0134444_101927	Ga0134444_1019274	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYM