3300014792: Human fecal microbial communities from obese patients in Germany - AS63_24

Overview

Basic Information

• IMG/M Taxon OID: 3300014792
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151599 | Ga0134427
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS63_24
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 133304745
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052660	Metagenome	142	N
F064817	Metagenome	128	N
F077781	Metagenome / Metatranscriptome	117	N
F090513	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134427_1000062	Not Available	85758
Ga0134427_1004990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	4119
Ga0134427_1031586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	696
Ga0134427_1042994	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134427_1000062	Ga0134427_1000062100	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQGAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLLVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPDYITGVFTDIWYKCQGYMDTDHVDLEEILELMHYNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEDDQRICIQNIIERNINQENQDENETI*
Ga0134427_1004990	Ga0134427_10049904	F090513	MAKYVRKMEWKLLHIKHILYRQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYML
Ga0134427_1031586	Ga0134427_10315861	F052660	HVLPENTPERIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIALPIPAHRAKSHDFACWWPAAADHSRSADALPGKSNF*
Ga0134427_1042994	Ga0134427_10429941	F077781	FILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*