3300014790: Human fecal microbial communities from obese patients in Germany - AS50_24

Overview

Basic Information

• IMG/M Taxon OID: 3300014790
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151591 | Ga0134419
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS50_24
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121400157
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F044554	Metagenome	154	N
F052660	Metagenome	142	N
F067844	Metagenome	125	N
F076189	Metagenome	118	N
F081354	Metagenome	114	Y
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134419_1001050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11175
Ga0134419_1001920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7003
Ga0134419_1004419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3572
Ga0134419_1014330	Not Available	1281
Ga0134419_1028431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	691
Ga0134419_1030140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	654
Ga0134419_1033493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	593

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134419_1001050	Ga0134419_10010503	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSCGRFLHGGILMGIVLPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNS*
Ga0134419_1001920	Ga0134419_10019204	F032286	MVKWVCQIVTPVRHRALVFNTRLFAGNAADDTLVTGDTFHFCRLVCLCVKRRNIILNGKRRSLLNSTLFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLALSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIDLSRISKRSENAPKNADFHAYGQDRKRTEN*
Ga0134419_1004419	Ga0134419_10044191	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVITPQHRSYRVPQG
Ga0134419_1014330	Ga0134419_10143302	F044554	IFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0134419_1028431	Ga0134419_10284311	F081354	LSAKKALDLVRENQQSSAHNFVKDFSSIFPKSRRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLRRLAFLPFHL*
Ga0134419_1030140	Ga0134419_10301401	F076189	VLSAGHCFFISFPPFIKPLLYVEKLQIGTVFPVVPDLYREFAELLACFDLHAIQSAQKQLRMLCNFHENTFGLLIFYTNY
Ga0134419_1033493	Ga0134419_10334932	F090515	LEFAGGEKRKTNIAADYAVKVPAFSALLCRHIGSIRTFLKS*