3300014788: Human fecal microbial communities from obese patients in Germany - AS56_0

Overview

Basic Information

• IMG/M Taxon OID: 3300014788
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151553 | Ga0134381
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS56_0
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 127714903
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F058555	Metagenome	135	N
F060985	Metagenome / Metatranscriptome	132	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134381_1000222	Not Available	47376
Ga0134381_1000239	Not Available	45973
Ga0134381_1002232	All Organisms → cellular organisms → Bacteria	7798

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134381_1000222	Ga0134381_10002221	F058555	MKLVYSQQIKNIMETKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSCIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIGIGMQEISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGKIIHIIIAEDFIKDVFLGGKRA
Ga0134381_1000222	Ga0134381_100022219	F042095	MTKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGDPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIRHKKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCEMTSFPIVDIPGLEFLVVSHTLYVNDGIPADKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMLNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPGPPDMWNYFDINTLPFFEVDKINPNITDFYFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAVHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGERNQFYGLAVSMYGSQYPYENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQKWTIKPE*
Ga0134381_1000239	Ga0134381_100023925	F050794	MMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLNELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG*
Ga0134381_1002232	Ga0134381_10022325	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHEFWYQVIKPWFKPERFGITHLWFPSGFSFIGYGEYHTIRGNRXXXRWLKTPIDKIDRENRIFGYWFPTYKKYIPHRIKVLKLALKDLERIKEEYGKD*