3300014787: Human fecal microbial communities from obese patients in Germany - AS62_0

Overview

Basic Information

• IMG/M Taxon OID: 3300014787
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151556 | Ga0134384
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS62_0
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 122439451
• Sequencing Scaffolds: 10
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F039147	Metagenome	164	N
F042936	Metagenome	157	N
F043945	Metagenome	155	N
F044554	Metagenome	154	N
F044555	Metagenome / Metatranscriptome	154	N
F059982	Metagenome	133	N
F062845	Metagenome	130	N
F064817	Metagenome	128	N
F078003	Metagenome	117	N
F078004	Metagenome	117	N
F090513	Metagenome	108	N
F092227	Metagenome	107	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134384_1000069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	100199
Ga0134384_1000085	Not Available	85795
Ga0134384_1000348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	33625
Ga0134384_1000569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	24087
Ga0134384_1000733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	19506
Ga0134384_1001094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	14365
Ga0134384_1001394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11571
Ga0134384_1001689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	9747
Ga0134384_1001748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9497
Ga0134384_1007399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2010

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134384_1000069	Ga0134384_100006937	F044554	VAVLRRVNAARRAVGLFHGGLPPPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFKTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL*
Ga0134384_1000085	Ga0134384_100008510	F105375	MKNNEIFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0134384_1000085	Ga0134384_1000085107	F032312	MAKIKDYDEDLSAPKILRRRDNNGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVLLGFTWFKLLGVALMILLWPIVFIYALHEGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0134384_1000085	Ga0134384_100008512	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0134384_1000085	Ga0134384_10000852	F044555	MKTITRITINQNGNQILTCKVCKDINNILFMSNEGILELISGLNYMDNLPIVPDLEKPIEIQITYTREIPIEQNKRVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSRSNTK*
Ga0134384_1000085	Ga0134384_10000857	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLDANQYKLYPLLLDILKISLKDAYHNYSNTSNIHYEGGKFPSMLTIQLFNLEF*
Ga0134384_1000348	Ga0134384_100034814	F059982	MLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDEDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGAAVYVAEDAAATASPEV*
Ga0134384_1000569	Ga0134384_100056910	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMENLSCLNVSYRDLETDKIYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLADGAIREIAGESLEAMYEWADGELLLWRLEGSPNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGNMTVLRIQSSNGASNTALQHFAEENPEVILAQETLTKSAMNAASLAARMSASADASDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKLLAQVIADQEATAKCVLLADYDEPIEDSYYLIRVSDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEEADKLIEGLEQ*
Ga0134384_1000733	Ga0134384_10007337	F043945	MAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLDGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMGFALEDDENSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGGVE*
Ga0134384_1000979	Ga0134384_100097917	F078004	LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGTAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLIIGTIFHNAF
Ga0134384_1001094	Ga0134384_10010942	F042936	MGRGGGKGWVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0134384_1001394	Ga0134384_100139413	F078003	VNEHLAFAPCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREAYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVRQARENPFFHLYFAQEKLPCTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKLSGQ*
Ga0134384_1001689	Ga0134384_10016892	F090513	MAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA*
Ga0134384_1001748	Ga0134384_10017485	F092227	MKEEKRKRILRVGCLILACVFGLSLLGSLVMMLLV*
Ga0134384_1007399	Ga0134384_10073993	F062845	PFILHEKFRSDNNKQRKERFQKEFERYIIDGLLNAVPSRSCA*