3300014785: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T2

Overview

Basic Information

• IMG/M Taxon OID: 3300014785
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121299 | Gp0151679 | Ga0134507
• Sample Name: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T2
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Washington
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113432307
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:41	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: University of Washington
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F059106	Metagenome	134	N
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134507_1001547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:41	6905
Ga0134507_1005792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2446
Ga0134507_1006410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2284
Ga0134507_1024244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	857
Ga0134507_1038329	Not Available	594

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134507_1001547	Ga0134507_10015477	F097493	MYKFYSKNGTAQFYERGVEIDGTVYGIRTDSDILRIKRSVLNSKFAESEEDFDMNVEIAKIQHTDITFEQPTAEQLSQIQAKKFDSMSDMKQHVQSVMSGDETMSQDEINAMLMLQIAELKAGVDGE*
Ga0134507_1005792	Ga0134507_10057921	F059106	KIRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV*
Ga0134507_1006410	Ga0134507_10064103	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELARQLGVAYAPELDSTAKAVAEWFVQEPDSLRVSGLDLVYPVALDADSNMSHTDDLNKFLYWSGCDGVPDDVTVALPLDSTAMTAWLYAPQADSAAAELLKDAAGHSEMGAAFIDYNGTAYVVAVFR*
Ga0134507_1024244	Ga0134507_10242442	F068811	MDQDGSEHNICSNREGLCPGKEPHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNGCRI*
Ga0134507_1038329	Ga0134507_10383292	F026592	TQGIAALAAQGGVATLTERSDATFSVMQFSSADGE*