3300014782: Human fecal microbial communities from obese patients in Germany - AS68_0

Overview

Basic Information

• IMG/M Taxon OID: 3300014782
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151561 | Ga0134389
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS68_0
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 119994586
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F052660	Metagenome	142	N
F076064	Metagenome	118	N
F076189	Metagenome	118	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134389_1001562	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	8052
Ga0134389_1004405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	3054
Ga0134389_1005044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2721
Ga0134389_1016699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1073

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134389_1001562	Ga0134389_10015624	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEETKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAAMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY*
Ga0134389_1004405	Ga0134389_10044052	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRREILQQEGKRRGWWS*
Ga0134389_1005044	Ga0134389_10050442	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSVHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL*
Ga0134389_1016699	Ga0134389_10166992	F052660	MCILHVLPENTPERIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS*