3300014780: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01D049B1

Overview

Basic Information

• IMG/M Taxon OID: 3300014780
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121299 | Gp0151649 | Ga0134477
• Sample Name: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01D049B1
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Washington
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 112481876
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: University of Washington
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057001	Metagenome	137	Y
F078005	Metagenome	117	N
F080673	Metagenome	115	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134477_1008230	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2192
Ga0134477_1009779	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1876
Ga0134477_1026095	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	768

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134477_1008230	Ga0134477_10082301	F057001	HQMPIQAPRVRANLMTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKENEIKVDKSIVSALVNLAKDKEVVIQLCKEILPRVNNTFCAYREVKREYYDKNEQDKNKNLKMSEIEDIAILGSYHKRFGYNEPVEYDFGIYYETFNGADKRIIKCAVPIKRYTFSLIAKCVTYYLTHPKNER*
Ga0134477_1008745	Ga0134477_10087453	F101356	LVGIFEVRPLLFDSSTIELFSHVGFGDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0134477_1009779	Ga0134477_10097793	F080673	MNMNEIELLRLQDEALSYLRDNITKDEAYYVLTTDKDMIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLAASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL*
Ga0134477_1026095	Ga0134477_10260952	F078005	MKKSKFVKELERIIDMVKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMDLTVEANIMASMGDRTFACLMSEVYKQKFTKAVTISEDEDDEDN*