3300014778: Human fecal microbial communities from obese patients in Germany - AS53_18

Overview

Basic Information

• IMG/M Taxon OID: 3300014778
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151580 | Ga0134408
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS53_18
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130497068
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055715	Metagenome	138	N
F058555	Metagenome	135	N
F071325	Metagenome	122	N
F078693	Metagenome	116	N
F087334	Metagenome	110	N
F089592	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134408_100006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	299300
Ga0134408_100179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	69133
Ga0134408_100323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	48944
Ga0134408_100382	Not Available	41938
Ga0134408_122593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	766

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134408_100006	Ga0134408_100006167	F078693	MVLAPVRGLERFYVKWNCSLLMSKENQKSTSDFDALDPRERGYSPLSDPEGVVEAKKC*
Ga0134408_100179	Ga0134408_10017939	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSIFLYPFRSSPLLAITFLYHPKDFFLYRATALFEYREKHQ*
Ga0134408_100323	Ga0134408_1003231	F071325	FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0134408_100382	Ga0134408_10038221	F058555	MGDLHRLPIHPNNLFRIDKTCIFAENKKNLMETKVSLLQKTKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYKHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMTYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVSYLLNELNNKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLFYIGRKIHILISSYYIIDVFLGEKYAKMINDGYLKISQ*
Ga0134408_100382	Ga0134408_1003829	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDNNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEE*
Ga0134408_122593	Ga0134408_1225932	F055715	LTKANEFDKMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAKILDN*