3300014772: Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1751

Overview

Basic Information

• IMG/M Taxon OID: 3300014772
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121303 | Gp0151702 | Ga0134530
• Sample Name: Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1751
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Freiburg
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 65151822
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Microbial Communities From Medical Facility Sewage Samples Near Freiburg, Germany
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Medical Facility Sewage Samples Near Freiburg, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Germany: Freiburg
• Coordinates
  • Lat. (^o): 48.0
  • Long. (^o): 8.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041054	Metagenome / Metatranscriptome	160	Y
F042737	Metagenome / Metatranscriptome	157	Y
F047125	Metagenome / Metatranscriptome	150	N
F087334	Metagenome	110	N
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134530_1000021	Not Available	12699
Ga0134530_1000177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	7018
Ga0134530_1002796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2089
Ga0134530_1003205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1912
Ga0134530_1020521	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	621

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134530_1000021	Ga0134530_10000215	F089054	MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPGHKHSTYIRLKLREILEVNLRDITIIDIISLP*
Ga0134530_1000177	Ga0134530_10001778	F042737	MKLTEKSNEVYSYVKENGGRVAVEELCEALGRAPRSINANVTDLAKKSLVVREKVTAEGEDAKDMTYVVLTEEGKTFVPSDDEE*
Ga0134530_1002796	Ga0134530_10027963	F047125	MEVALLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS*
Ga0134530_1003205	Ga0134530_10032051	F087334	MASRYPFVGAAAYLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ*
Ga0134530_1020521	Ga0134530_10205211	F041054	RNCKDIGVNLQRIMKRLMQNDNLVKLLYYTDKDPLSNENLTEEQKESEIFEKLIKIVPRIGPKETASSIIALRVVTGKKNQDNSEFKDVLISVEVFVPLTQWIIKGTNLRPFAILGEIEESLDGKMIEGLGKMSGGDFELNFLTEEISSYKQEFIITSYD*