3300014771: Human fecal microbial communities from infant at 12 months in Denmark - 566_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300014771
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193768 | Ga0169781
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 566_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 119479332
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055715	Metagenome	138	N
F067720	Metagenome	125	Y
F097493	Metagenome	104	Y
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169781_100258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	50868
Ga0169781_102568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	8220
Ga0169781_104380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4584
Ga0169781_105333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3639

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169781_100258	Ga0169781_1002581	F055715	LTKANEFDRINELLIERTAENKTFSGSSKELQKNKLKKFLTNEKLCDKINELIRVGTAEILDN*
Ga0169781_102568	Ga0169781_1025681	F099269	VRELLLLDDLGDRASGASVLASATGDAGVLVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*
Ga0169781_104380	Ga0169781_1043805	F097493	MKNGQAYFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTSITFKQPTAEQLSQIQAKTYNSMTELKQHVQSIMNGELTQDEINAMLMLQIAELKAGVDGE
Ga0169781_105333	Ga0169781_1053337	F067720	MSSTTYGHIGDLTDMFAVQEQFRHATKMVCDFVDLNKIDHFAVIGNMVRNAGQLPQPFWLGAACGGGSCSAARCAAKT*