3300014770: Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10012

Overview

Basic Information

• IMG/M Taxon OID: 3300014770
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121306 | Gp0151719 | Ga0134547
• Sample Name: Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10012
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bologna
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70540332
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Tanzania
• Coordinates
  • Lat. (^o): -3.6347588
  • Long. (^o): 35.0828588
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000029	Metagenome	5053	Y
F026489	Metagenome	197	N
F052660	Metagenome	142	N
F056682	Metagenome	137	Y
F067844	Metagenome	125	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134547_1003084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	2720
Ga0134547_1010201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea	1174
Ga0134547_1022923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	651

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134547_1003084	Ga0134547_10030843	F056682	MKMQSRAGKVANQSVGQSEMYPASFWAFPSKNRSTIPIQELGKIYEKQEVL*
Ga0134547_1010201	Ga0134547_10102011	F052660	ILRVLPKNTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPSHRAKSWWSAAAGHSRSADALPGKSNS*
Ga0134547_1018918	Ga0134547_10189181	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSYLPRPLTM
Ga0134547_1022923	Ga0134547_10229232	F026489	MNFTAWGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKQRATPEKTEDSRLFGVKIF*
Ga0134547_1030601	Ga0134547_10306011	F000029	VEKLKLPTSFHPNQARIKFSTGQCVKEVLCDIAPTNSCHLLLRWAWLHFKTLNLDERSLYLRHEGHEMKLKFMTPRQASKDQHRLKEKIEKERIEKEEI*