3300014766: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_114

Overview

Basic Information

• IMG/M Taxon OID: 3300014766
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121296 | Gp0151509 | Ga0134337
• Sample Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_114
• Sequencing Status: Permanent Draft
• Sequencing Center: The George Washington University (GWU)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 98653097
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → TM7 phylum sp. oral taxon 352	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Maryland
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028722	Metagenome / Metatranscriptome	190	Y
F066860	Metagenome	126	N
F085820	Metagenome	111	N
F089055	Metagenome	109	Y
F095630	Metagenome	105	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134337_100350	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	22940
Ga0134337_100526	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → TM7 phylum sp. oral taxon 352	18617
Ga0134337_101063	All Organisms → cellular organisms → Bacteria	12229
Ga0134337_102617	All Organisms → cellular organisms → Bacteria	6103
Ga0134337_106051	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2796
Ga0134337_123767	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	720

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134337_100350	Ga0134337_1003506	F085820	MRSTFYLFAVLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVANECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGEVVEADYLWLPGIDVFGLLAPPNPDHLKQRIVLRLADGTEIEKELSEKGKK*
Ga0134337_100526	Ga0134337_1005264	F028722	MATTVDNGQTCLEKRGIEERHKEITRSDYNIEDQYGPTHKDALSDGDPQGKGTGHGGHTHYLPDCTKPTGMIDYSNFDTEHGGGQYDIEGRNNISGRKRALAISMYNKENMYGPTIVDTSVNRSDGQYFVGQTTKHL*
Ga0134337_101063	Ga0134337_1010639	F103433	MMFVMKEWSKNKPGVVFFFAVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGIAASVFTVMLSFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFFKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0134337_102617	Ga0134337_1026172	F095630	MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGLFISSDIILTAKTYGDTCFMDVEFYSPEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELVQDELLHELSAVQSSPWRQQSDMTYRKADSKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEEYIQSPVDQALAAVVMQAVALNFLVMIRKKHTVYDRGDQWSEASKSVGYRTFLGISKKDDSIVHQLKNEFMEYVQFLSASPFCDNLQAALVRCSHNYEQVLLGRDTLNSILGGCVVGGRGWLEMADDTRIRKMIDLIEIDIYEIDY*
Ga0134337_106051	Ga0134337_1060513	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGWVLALFAPWALIVSCICLAIISRQMKKRHASKDHLTTIVRASFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE*
Ga0134337_123767	Ga0134337_1237672	F089055	RTFWHLKVEKMNSTPECVIKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGGYEKSLDYINNSPLEAVQAIGKSLQLFREDKTKESCR*