3300014760: Human fecal microbial communities from obese patients in Germany - AS51_6

Overview

Basic Information

• IMG/M Taxon OID: 3300014760
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151621 | Ga0134449
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS51_6
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96319452
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F042936	Metagenome	157	N
F088920	Metagenome	109	Y
F099451	Metagenome	103	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134449_100179	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	50351
Ga0134449_100471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae	25039
Ga0134449_103681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	4003
Ga0134449_108846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1430
Ga0134449_109238	All Organisms → cellular organisms → Bacteria	1363
Ga0134449_111782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1063

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134449_100179	Ga0134449_10017940	F099451	LCPGKYASGLLIKKIMAIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLSDDEIRELHNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKDK*
Ga0134449_100471	Ga0134449_10047123	F032286	MVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKRAEI*
Ga0134449_103681	Ga0134449_1036816	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVGQEGALTPPYLGKVYFRSRLRGKG*
Ga0134449_108846	Ga0134449_1088462	F088920	VSANLHHYPAFEAGLILHLILHLILHFSQKAAIFAPKRAILLLFVPTLFFVGLSVLSPQTSLKISGQASLY*
Ga0134449_109238	Ga0134449_1092382	F099451	MEIKNVGQLRKIIENLSDDFEIEMRVRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVYDKVLCLGVTSND*
Ga0134449_111782	Ga0134449_1117822	F101355	MAFWFIQWYLPSAQSPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFSFFKIYLKKIDFFQNIA*