3300014743: Human fecal microbial communities from obese patients in Germany - AS64_12

Overview

Basic Information

• IMG/M Taxon OID: 3300014743
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151573 | Ga0134401
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS64_12
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72100148
• Sequencing Scaffolds: 18
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041208	Metagenome	160	N
F042910	Metagenome	157	N
F043413	Metagenome	156	N
F051934	Metagenome	143	N
F056623	Metagenome	137	N
F058154	Metagenome	135	N
F073573	Metagenome	120	N
F073574	Metagenome	120	N
F073656	Metagenome	120	N
F077319	Metagenome	117	N
F078693	Metagenome	116	N
F082714	Metagenome	113	N
F082715	Metagenome / Metatranscriptome	113	N
F087213	Metagenome	110	N
F088920	Metagenome	109	Y
F090515	Metagenome	108	N
F101192	Metagenome	102	N
F101193	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134401_100560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7400
Ga0134401_100878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4525
Ga0134401_101313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3326
Ga0134401_101986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2620
Ga0134401_102281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2430
Ga0134401_102582	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2249
Ga0134401_102681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2204
Ga0134401_103001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2052
Ga0134401_103318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1923
Ga0134401_105766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1378
Ga0134401_105981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1348
Ga0134401_107062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1222
Ga0134401_108853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1059
Ga0134401_112094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	864
Ga0134401_114742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	754
Ga0134401_115847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	717
Ga0134401_118332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	647
Ga0134401_121184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	581

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134401_100560	Ga0134401_1005605	F051934	MGLMRRLAAAALAAVLLLSTALCERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQSTTLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGIRQAIADLTVQENDGRLENTALIACAEEIARLSEDDRALYYYIEAFGLESGTDADIFDTLATLPEYVEANFPDGLSIEHTENGVSWQNGEKTVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPASYPVTLPFYTQIDADGMMTGDDGIHLAFEGEVQGDTITIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGED*
Ga0134401_100878	Ga0134401_1008781	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPATQKRDWKPLIFPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVAVADEPELRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG*
Ga0134401_101313	Ga0134401_1013132	F041208	MRKILAMLLSVMMLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETNLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLSGTAYTAFAINKVEKGYDTFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCHTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGMWGPQDGNG*
Ga0134401_101986	Ga0134401_1019862	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMGQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES*
Ga0134401_102281	Ga0134401_1022811	F082714	DEGRELVMVVGIRFAADAPVRTVLQAFLPIFSTVDVDFLVREYWVCTFGNGLPERRFTAQEMRRAVDALTPDEHAELFTIYVLPHDAPDTPPSSCEDFCARRFTMAFYAYDGDGYALLAQSEEQVEAVIETLRKAVEIRSVEAVECETLARWAF*
Ga0134401_102582	Ga0134401_1025823	F073656	FTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKDAPDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQTQGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0134401_102681	Ga0134401_1026813	F078693	MVRAPVRGAERSFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKEEVETEKS*
Ga0134401_103001	Ga0134401_1030012	F073574	MLLPAAVRPYAADVDGTASRVRCAIALNGSKELHIQLCGRLKRGLFGRNQLLADGNVLCVALHQPDGDVPLFDSRCDGYANVLDDRQTPAPIPLHPAICPKCRNAAFQLRLTFEYPEAEELAAFANPDDMFTWVWVTMRCTRCHAVFRGDFTAD*
Ga0134401_103318	Ga0134401_1033182	F042910	LADRLYCALNGTTLHDLDARIHLLDVEELAPAVRTVTANRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAEPSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITALTISAAGKISFQGLTIAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC*
Ga0134401_105766	Ga0134401_1057662	F087213	MKKFSSVLLAVLLIFSCWTAATAESTDAVSGAPLDNDIEIVYKEHFDDMVTHYAXXXLLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADAALDARLQAILAACGLNPEDYDISVIRNLGGMIEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV*
Ga0134401_105981	Ga0134401_1059812	F043413	MLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECEGQTYTLEIEGCGGGDFMSGMFLPDETDSWSDSPFAFDGVLWDDDMQSPPEGAPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGVDTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADEYAHPELVGKRIGMGEYDLVIDNVNLSFMRANITMHYEFPAAYTEDEICQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE*
Ga0134401_107062	Ga0134401_1070622	F101193	MARKCTEYHYFQHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDETQKFRDLQEH*
Ga0134401_108853	Ga0134401_1088533	F077319	VQEKRGGQKIMLIRNATLQMSATERACMDVRVMNGCVWEMGVALVKGLYESEIDLHGDVLMPGRMLETPVPAADEKALRLLCRKLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD*
Ga0134401_112094	Ga0134401_1120941	F090515	MIRSIRGACQEGVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS*
Ga0134401_114742	Ga0134401_1147421	F088920	VSANLHHYPAFWAGLILHLILHFSKKAAIFAPKRVILLIFVPTLFFCCGAVLSLHTSSKISGQTSLYQPWLSPYC
Ga0134401_115847	Ga0134401_1158471	F082715	MMKFMKRALSLLISAMLLLGCFGLAEEAPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGNDVVSTVNLDARDATILLVEPDEEGNG*
Ga0134401_118332	Ga0134401_1183321	F101192	VNIVSVTFGGCGATMQTEPSDKEGRNMTYRGWLLVDIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG*
Ga0134401_121184	Ga0134401_1211841	F073573	RFPNEAPPLNLSAFDRAGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRVRPRGGEIEALPRVMLSVYSEGMPFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCEESAITYQPAFLWYKDYCTKA*