3300014741: Human fecal microbial community from subjects in taly - 20007

Overview

Basic Information

• IMG/M Taxon OID: 3300014741
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121306 | Gp0151752 | Ga0134580
• Sample Name: Human fecal microbial community from subjects in taly - 20007
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bologna
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 36406710
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Italy
• Coordinates
  • Lat. (^o): 44.4950537
  • Long. (^o): 11.3427401
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F067720	Metagenome	125	Y
F078822	Metagenome	116	N
F087334	Metagenome	110	N
F088921	Metagenome	109	N
F090513	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134580_100001	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	28875
Ga0134580_100289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	4004
Ga0134580_101503	Not Available	2109
Ga0134580_101925	Not Available	1897
Ga0134580_102107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1827
Ga0134580_102657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1634

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134580_100001	Ga0134580_1000013	F067720	MASTTYDHFANPGKMYAAQEHFRHVTKMVCARLRGLTKTYHFPDVAKLVTFCHQFAVLGTMVRNAGQLPQPFWLGAACGGGSHSLSASVART*
Ga0134580_100289	Ga0134580_1002891	F090513	MLKIFAIAKYVRKMEWKLLHIKHILYRRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA*
Ga0134580_101503	Ga0134580_1015033	F044554	DAQLTGRNGTIACGGSAQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISQYLFLSFPFSFRTNFAQTLFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0134580_101925	Ga0134580_1019252	F078822	LSSTFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0134580_102107	Ga0134580_1021072	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSLLLAITFLYHPKDFFLYRAAALFEYREKHP*
Ga0134580_102657	Ga0134580_1026574	F088921	LGAIIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANK*