3300014737: Human fecal microbial communities from infant at 4 months in Denmark - 567_4M

Overview

Basic Information

• IMG/M Taxon OID: 3300014737
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193773 | Ga0169786
• Sample Name: Human fecal microbial communities from infant at 4 months in Denmark - 567_4M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43770064
• Sequencing Scaffolds: 1
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F094005	Metagenome / Metatranscriptome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169786_100076	Not Available	83124

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169786_100076	Ga0169786_10007659	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDIVITKEKYQAAKDLVPAHDISDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0169786_100076	Ga0169786_10007665	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQISLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQHNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0169786_100076	Ga0169786_10007668	F080163	MKTIKFLQESFETKERFQQEISFKYSYNLSIVESIDFRINRRNIRYFYEAMQNFENSLVDEFKEKKNNFCSAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQGFYNYNHRDLNFSTKLESEVLDSEIELLQEKLDLIREEICELIGVDPNLEKQGHEENYIFNLNIDSDNQIGFFLQATKL*
Ga0169786_100076	Ga0169786_10007671	F032312	MARIKDYDEDLSAPKLLKERARDNKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVVWFIVFLYGLVS*
Ga0169786_100076	Ga0169786_10007672	F094005	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLDGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDEETFEKVITLDKKLKKLIEKLNE*