3300014573: Human fecal microbial communities from obese patients in Germany - AS58_24

Overview

Basic Information

• IMG/M Taxon OID: 3300014573
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151595 | Ga0134423
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS58_24
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111820318
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F055775	Metagenome	138	N
F078693	Metagenome	116	N
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134423_1000085	Not Available	85831
Ga0134423_1000233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	44977
Ga0134423_1000739	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	17809
Ga0134423_1000843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	15778
Ga0134423_1009020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1460
Ga0134423_1034937	All Organisms → cellular organisms → Bacteria	540

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134423_1000085	Ga0134423_100008593	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNASNIHHEGGKFPSMLTIQLFNLEF*
Ga0134423_1000233	Ga0134423_100023328	F026489	LTPKENQKSASDFDALEPRKXXXXPEKTEDSRLFGVKIF*
Ga0134423_1000739	Ga0134423_100073910	F055775	MAQIAQQDNLVIEVTTTAKALDSDTKKKLIECIKGGTITDVILVTKEVDKKISHARVVSWLVDTAGSSPKYTIDIINANSGAVEEIALN*
Ga0134423_1000843	Ga0134423_10008433	F078693	MVLAPVRGAERSCIKANYSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVEXXXXFFGIVKGE*
Ga0134423_1009020	Ga0134423_10090203	F026592	CQNRLRTASPQGIAALAAQGGVATLTERSDETFSVGQFSSADWE*
Ga0134423_1034937	Ga0134423_10349371	F026592	PQGIAALAAQGGVATLTERSDETFSVMQFLSADRE*