3300014570: Human fecal microbial communities from obese patients in Germany - AS63_12

Overview

Basic Information

• IMG/M Taxon OID: 3300014570
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151572 | Ga0134400
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS63_12
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118509429
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F052660	Metagenome	142	N
F087334	Metagenome	110	N
F088920	Metagenome	109	Y
F090513	Metagenome	108	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134400_1000197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	38007
Ga0134400_1000317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	28581
Ga0134400_1000398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	25145
Ga0134400_1000876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	14460
Ga0134400_1002113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7141
Ga0134400_1004274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3893
Ga0134400_1010587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1806
Ga0134400_1013652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1457
Ga0134400_1035443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	581

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134400_1000197	Ga0134400_100019711	F032286	MVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQNRKRAEI*
Ga0134400_1000317	Ga0134400_10003176	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0134400_1000398	Ga0134400_100039826	F101355	MIEPPFQHGIADMAFGFIQWYLPSAQSPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0134400_1000876	Ga0134400_10008766	F042936	VWKTKERIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKD*
Ga0134400_1002113	Ga0134400_10021135	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYWEKHP*
Ga0134400_1004274	Ga0134400_10042741	F090513	MLKIFAMAKCVRKMEWKLLHIKHILYRQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPY
Ga0134400_1010587	Ga0134400_10105872	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS*
Ga0134400_1013652	Ga0134400_10136522	F088920	VSANLHHYPAFEAGLILHLILHFSQKAAIFAPKRAFSFLFVPTLFFVGLSVLSPQTSLKISGQASLY*
Ga0134400_1035443	Ga0134400_10354431	F026592	ASPQGIDAQASQGSVAPLTERSDETFSVEQFSSADWE*