3300014564: Human fecal microbial communities from infant at 12 months in Denmark - 87_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300014564
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193872 | Ga0169885
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 87_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 139681461
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F055715	Metagenome	138	N
F059106	Metagenome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169885_100163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	76320
Ga0169885_101365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	18057
Ga0169885_118481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1026

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169885_100163	Ga0169885_1001632	F055715	LTKANEFDRINELLIERTAKKFERVSKNKLKKFLTNEKLCDKINELIRVGTAEILDN*
Ga0169885_101365	Ga0169885_1013651	F059106	QTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV*
Ga0169885_118481	Ga0169885_1184813	F029444	MEASGQLTGFEPEDLMSWTVSNLQRPLREDVSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*