3300014562: Human fecal microbial communities from obese patients in Germany - AS53_6

Overview

Basic Information

• IMG/M Taxon OID: 3300014562
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151548 | Ga0134376
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS53_6
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 112372844
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050794	Metagenome	145	N
F052660	Metagenome	142	N
F058555	Metagenome	135	N
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F078693	Metagenome	116	N
F083451	Metagenome	113	N
F088920	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134376_100275	Not Available	42027
Ga0134376_100363	Not Available	34137
Ga0134376_100975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	14682
Ga0134376_101042	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	13831
Ga0134376_101403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	10311
Ga0134376_103508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4150
Ga0134376_106038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2223
Ga0134376_108560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1562

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134376_100275	Ga0134376_10027529	F058555	LIKLVYSQKIKKNLMETKVSLLQKTKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKSKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYKHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMTYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVSYLLNELNNKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLFYIGRKIHILISSYYIIDVFLGEKYAKMINDGYLKISQ*
Ga0134376_100363	Ga0134376_10036339	F050794	MMLYTSHYFVNNRQRQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDITQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDGHDYALYMKEECDC*
Ga0134376_100975	Ga0134376_1009756	F062845	MDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIINGLLNAVPSRACT*
Ga0134376_101042	Ga0134376_10104214	F083451	MEEKDVLNLLMSRKDIRKLNECYSKMDFVGAMKYRKQIKDIIDKESRIMLTRSESLIELMNGSGDEYKFKMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGNNIREGYDMFKEEAEMVNETDRSKIEEFNKKLDHDQM*
Ga0134376_101403	Ga0134376_1014032	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAVGHNEMGAAFIDYNGTAYVVAVFR*
Ga0134376_103508	Ga0134376_1035084	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSCGRFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNF*
Ga0134376_106038	Ga0134376_1060384	F088920	VSANLHHYPAFVAGLILHLILHFSQKVAIFASKQAFLLIFVPTLFFTGLSVFSPQTSPKISGQTSLH*
Ga0134376_108560	Ga0134376_1085601	F078693	KHQRRALVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS