3300014561: Human fecal microbial communities from obese patients in Germany - AS64_24

Overview

Basic Information

• IMG/M Taxon OID: 3300014561
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151600 | Ga0134428
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS64_24
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 114452598
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F056623	Metagenome	137	N
F067844	Metagenome	125	N
F074899	Metagenome / Metatranscriptome	119	N
F076064	Metagenome	118	N
F077320	Metagenome	117	N
F082714	Metagenome	113	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134428_100508	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	24515
Ga0134428_101495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8472
Ga0134428_103158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4257
Ga0134428_110295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1560
Ga0134428_117884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	981
Ga0134428_132785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	588
Ga0134428_132848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	587

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134428_100508	Ga0134428_1005086	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAAMKGVMLFTPEAEKLMLAEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY*
Ga0134428_101495	Ga0134428_1014959	F074899	MRGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSK*
Ga0134428_103158	Ga0134428_1031583	F047125	MDVVLLLMVLGVMLSGFRAADALDHMRKEILQQEGKRRGWWS*
Ga0134428_110295	Ga0134428_1102952	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGADVITPQHRSYRVPQGSPQVFGGP*
Ga0134428_117884	Ga0134428_1178842	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPATQKRDWKPLIFPLAAAVLNLGALALWLTLPSCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNGKRLLNAVGCEAVDYTPETAMFYDVMDAEITQQRRPAIVQKADGIVQQRG
Ga0134428_132785	Ga0134428_1327851	F082714	MVVGIRFAADAPVRTVLQAVLPIFSTADVDFLVREYWVCTFGNGLPESRFTAQEMRRAVDALTPDEHAELFTIYALPHDAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSGEQVRAVIETLRKAVEIRSVEAFERKTLARWQF*
Ga0134428_132848	Ga0134428_1328481	F077320	MKRKGMRRRRKLVLLAVLLIMVGIAVWRIWQTPRSVVLHRQDAWLSSAEPEMVDTLPDNTFTAELSEEIDGRLLYIRDYSASGHYQIVWEDVSAEAAEAYLTALLDKGFTRLMGTAEDIAGGVLLARGDLTLSISLSGGTLNMLMTRAEESTPTPLP*