3300014558: Human fecal microbial communities from obese patients in Germany - AS44_24

Overview

Basic Information

• IMG/M Taxon OID: 3300014558
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151589 | Ga0134417
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS44_24
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 112435114
• Sequencing Scaffolds: 4
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F058555	Metagenome	135	N
F060985	Metagenome / Metatranscriptome	132	N
F078004	Metagenome	117	N
F083451	Metagenome	113	N
F085718	Metagenome	111	N
F089054	Metagenome	109	N
F089592	Metagenome	109	N
F090514	Metagenome	108	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134417_100026	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	156666
Ga0134417_100052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	111457
Ga0134417_100075	Not Available	86185
Ga0134417_100174	Not Available	53234

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134417_100026	Ga0134417_100026134	F083451	MYKSEKEKQILDLLMSRKDIRKLVEKSNECYSKMDFVGAMRYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDCLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM*
Ga0134417_100026	Ga0134417_100026189	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGDRPIVVMVENDNADDYIILRYNETGRRNINSQSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSSVSYYVDKLEEDKCFDELCEKIRVKRDRIYNIEIISLSDDEATV*
Ga0134417_100026	Ga0134417_10002621	F058555	MGTKIRFLHIMKSNFDKILTERYIPRNIQAKKDELGCVKLPAGSLICPVDFKSVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVSKHVFLRRRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRRMANKSRKLNRVKMLSKIIFLARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMPISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGRLRLSYKGTIMHIIIAEYFIKDVFLGAKGVEMSKAG*
Ga0134417_100026	Ga0134417_10002632	F089592	MKEILKSKNVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGGKERQAVIDLLLYIGIVTRSDFTEDDYYAGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTNKVKDVKKKEDVEEGDKEE*
Ga0134417_100026	Ga0134417_10002639	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSGKPGMANVDWGDGIKEQFPMTKVQGKDDYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNGGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPSFEVDKINPNITDFYFLNDWVSGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAAYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0134417_100052	Ga0134417_10005237	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRENFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRARAGSSLPLSPASNIFLKQTPRRGLPLAWNVGAGSFLFCG*
Ga0134417_100075	Ga0134417_10007557	F105375	MKNNETFQTTQHLDKLVTNLGLQIQGLFSLDLEEILDYSNNLMNLLVNAYVENQCLAISAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0134417_100075	Ga0134417_10007572	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDREDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0134417_100174	Ga0134417_1001749	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVISYRIEKLNPYLRYPNQEINNNHLHSEHIRLQIREMLQIPLSDITIIDIISLP*
Ga0134417_132941	Ga0134417_1329411	F078004	TGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF*