Sample 3300014555

Overview

Basic Information
IMG/M Taxon OID	3300014555 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121297 \| Gp0151594 \| Ga0134422
Sample Name	Human fecal microbial communities from obese patients in Germany - AS56_24
Sequencing Status	Permanent Draft
Sequencing Center	University of Hohenheim
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	101919673
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Obese Patients In Germany
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Germany
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F064725	Metagenome	128	N
F068811	Metagenome	124	N
F073656	Metagenome	120	N
F078822	Metagenome	116	N
F087336	Metagenome	110	N
F089005	Metagenome	109	N
F092228	Metagenome	107	N
F099269	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F026592

Metagenome / Metatranscriptome

197

F042936

Metagenome

157

F047126

Metagenome

150

F064725

Metagenome

128

F068811

Metagenome

124

F073656

Metagenome

120

F078822

Metagenome

116

F087336

Metagenome

110

F089005

Metagenome

109

F092228

Metagenome

107

F099269

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0134422_100057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	126025	Open in IMG/M
Ga0134422_100096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	92400	Open in IMG/M
Ga0134422_100104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	86193	Open in IMG/M
Ga0134422_100165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens	57534	Open in IMG/M
Ga0134422_100254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	37702	Open in IMG/M
Ga0134422_100498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	18068	Open in IMG/M
Ga0134422_102099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	4733	Open in IMG/M
Ga0134422_103088	Not Available	3607	Open in IMG/M
Ga0134422_104132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2922	Open in IMG/M
Ga0134422_104218	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2878	Open in IMG/M
Ga0134422_111158	Not Available	1344	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0134422_100057

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

126025

Open in IMG/M

Ga0134422_100096

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

92400

Open in IMG/M

Ga0134422_100104

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

86193

Open in IMG/M

Ga0134422_100165

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens

57534

Open in IMG/M

Ga0134422_100254

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

37702

Open in IMG/M

Ga0134422_100498

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus

18068

Open in IMG/M

Ga0134422_102099

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

4733

Open in IMG/M

Ga0134422_103088

Not Available

3607

Open in IMG/M

Ga0134422_104132

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

2922

Open in IMG/M

Ga0134422_104218

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes

2878

Open in IMG/M

Ga0134422_111158

Not Available

1344

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0134422_100057	Ga0134422_100057114	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYRGKVYFRSRLRGKG*
Ga0134422_100096	Ga0134422_10009629	F087336	MHCLLRGMVAELEQVPKAFRAAVNQRRAAVKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAPQEVNSQSALSESNQLISP*
Ga0134422_100104	Ga0134422_1001041	F092228	VLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGLRYVTVCKDNFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKCYLIDQLAIS*
Ga0134422_100165	Ga0134422_10016541	F099269	LLLLDDLSDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0134422_100254	Ga0134422_10025421	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCEFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*
Ga0134422_100498	Ga0134422_10049822	F089005	LTKSKQRSIIVLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQ
Ga0134422_102099	Ga0134422_1020995	F068811	MDQDGSEHNICSTREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI*
Ga0134422_103088	Ga0134422_1030884	F078822	AFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATVYL*
Ga0134422_104132	Ga0134422_1041321	F026592	ISCCLRTASPQGIDAQASQGSVAPLTERSDETFSVKQFFSADRE*
Ga0134422_104218	Ga0134422_1042182	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAQGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0134422_111158	Ga0134422_1111582	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFEGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIK

Scaffold ID

Protein ID

Family

Sequence

Ga0134422_100057

Ga0134422_100057114

F042936

MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYRGKVYFRSRLRGKG*

Ga0134422_100096

Ga0134422_10009629

F087336

MHCLLRGMVAELEQVPKAFRAAVNQRRAAVKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAPQEVNSQSALSESNQLISP*

Ga0134422_100104

Ga0134422_1001041

F092228

VLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGLRYVTVCKDNFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKCYLIDQLAIS*

Ga0134422_100165

Ga0134422_10016541

F099269

LLLLDDLSDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*

Ga0134422_100254

Ga0134422_10025421

F047126

VYLKTKKMTNISQTQAGFKSKSLGILCEFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*

Ga0134422_100498

Ga0134422_10049822

F089005

LTKSKQRSIIVLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQ

Ga0134422_102099

Ga0134422_1020995

F068811

MDQDGSEHNICSTREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI*

Ga0134422_103088

Ga0134422_1030884

F078822

AFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATVYL*

Ga0134422_104132

Ga0134422_1041321

F026592

ISCCLRTASPQGIDAQASQGSVAPLTERSDETFSVKQFFSADRE*

Ga0134422_104218

Ga0134422_1042182

F073656

MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAQGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*

Ga0134422_111158

Ga0134422_1111582

F064725

MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFEGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300014555: Human fecal microbial communities from obese patients in Germany - AS56_24

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences