3300014553: Human fecal microbial communities from obese patients in Germany - AS58_6

Overview

Basic Information

• IMG/M Taxon OID: 3300014553
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151623 | Ga0134451
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS58_6
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 106917269
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F055775	Metagenome	138	N
F101193	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134451_100454	Not Available	29333
Ga0134451_112639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1150
Ga0134451_127708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134451_100454	Ga0134451_10045411	F055775	MAQIAQQDNLVIEVTTTAKALDSDTKKKLIECIKGGTITDVILVTKEVDKKISHARVVSWLVDTAGSSPKYTIDIINANSGKVEAIALN*
Ga0134451_112639	Ga0134451_1126393	F026592	CKTVWRTASPQGIAALAAQGGVATLTERSDATFSVVQFSSADRE*
Ga0134451_127708	Ga0134451_1277081	F101193	MARKCTEYHYFQHTYWDVMARYNWMRCPYCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFHELQKN*