3300014541: Human fecal microbial communities from obese patients in Germany - AS44_12

Overview

Basic Information

• IMG/M Taxon OID: 3300014541
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151563 | Ga0134391
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS44_12
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 94611170
• Sequencing Scaffolds: 6
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F050794	Metagenome	145	N
F060985	Metagenome / Metatranscriptome	132	N
F064725	Metagenome	128	N
F064817	Metagenome	128	N
F098313	Metagenome	104	N
F099269	Metagenome	103	N
F102167	Metagenome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134391_100078	Not Available	86190
Ga0134391_103432	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3673
Ga0134391_105043	All Organisms → cellular organisms → Bacteria	2433
Ga0134391_107748	All Organisms → Viruses → Predicted Viral	1545
Ga0134391_109632	Not Available	1231
Ga0134391_118751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	658

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134391_100078	Ga0134391_100078111	F032312	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWLKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0134391_100078	Ga0134391_100078112	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIRGNRWLKTPIDKIDREDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0134391_100078	Ga0134391_10007814	F105375	MKNNETFQTTQHLDKLVTNLGLQIQGLFSLDLEEILDYSNNLMNLLVNAYVENQCLAISAMISKQDGFAIYSFLFQTPDTSNGAVDALVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0134391_100078	Ga0134391_10007816	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMGLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAVKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0134391_100078	Ga0134391_1000785	F044555	MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGSLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0134391_103432	Ga0134391_1034321	F102167	IIDLDIMNEKMIDEYVAVLMIKSYDKITESYNLTTFSFHDKDMDGLRRLVSNAIMAVGLRNNPMTGDGNTAIK*
Ga0134391_105043	Ga0134391_1050432	F098313	IITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD*
Ga0134391_107748	Ga0134391_1077482	F064725	MGLQTVEVFVIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAIVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKLYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETVLGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLI*
Ga0134391_109632	Ga0134391_1096322	F050794	MLYTSNYFVKVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMCDLLDELKDDIDLNILIFDVSQLLIKYNLFRLEAITEQEFKNSFVRMDS
Ga0134391_118751	Ga0134391_1187511	F099269	VGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*