3300014536: Human fecal microbial communities from obese patients in Germany - AS58_12

Overview

Basic Information

• IMG/M Taxon OID: 3300014536
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151542 | Ga0134370
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS58_12
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79698411
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F055775	Metagenome	138	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067844	Metagenome	125	N
F076064	Metagenome	118	N
F078693	Metagenome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134370_101236	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	7418
Ga0134370_101341	All Organisms → cellular organisms → Bacteria	6898
Ga0134370_101565	All Organisms → cellular organisms → Bacteria	5985
Ga0134370_102263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4249
Ga0134370_105721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1835
Ga0134370_108558	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1266

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134370_101236	Ga0134370_1012366	F055775	MAQIAQQDNLVIEVATTAAALDGDTKKKLIECIKGGTITDVILVTKEVDKKISHARVISWLVDTTGDSPKYTIDIINANSGKVEAIALN*
Ga0134370_101341	Ga0134370_10134112	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFDMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDIDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0134370_101565	Ga0134370_1015652	F044555	MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGSLPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHYKR*
Ga0134370_101565	Ga0134370_1015658	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSHIGYGEYHIIRGNRGLKTPIDRINREDYIFGYWFPTYKKYIPYRIRILKLALKDLERIKEEYGKD*
Ga0134370_101565	Ga0134370_1015659	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSQGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPLVFIYALNDGIERYPFKKYAIPYIFILVVWFIVFLYGLVS*
Ga0134370_102263	Ga0134370_1022636	F078693	MVLALVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGVVEA
Ga0134370_105721	Ga0134370_1057213	F067844	MNTLAAETASAWYLILNRKLKTLPIYITQLSSHLPRPLTMGTQQVSAG
Ga0134370_108558	Ga0134370_1085584	F076064	SFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*