3300014500: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_8mM MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300014500
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0206848 | Ga0180441
• Sample Name: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_8mM MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 87714780
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025010	Metagenome / Metatranscriptome	203	Y
F043264	Metagenome / Metatranscriptome	156	Y
F069666	Metagenome / Metatranscriptome	123	Y
F082271	Metagenome / Metatranscriptome	113	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180441_105998	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2531
Ga0180441_111951	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	836
Ga0180441_113109	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	737
Ga0180441_113309	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	722
Ga0180441_113516	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	708

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180441_105998	Ga0180441_1059981	F043264	VSTTTGLTSALANTAVGRIVLAPGTYILSAELSITRSVVLEAAVAGSVVLNAQASSSSSRRVLNINPGSSGVVQVIGLNITGGYVDEGVPGALC
Ga0180441_111951	Ga0180441_1119511	F082271	MSEARQRSQQALLSAVSAFRGDGMRKAWNGWLGLLHDRQVMASAVYCMSLRLQRTGFASWLAAAEVSQQLRSTLSSLSPAKRSMRKAINSWSEYGNALQSVRRATAALRMREERVAFSTWHEHVCSNCERDAAMRCAVSSMLQSSMRASLNTWMLYSEEHAEASRALAGALSSLQPEGRAMRSALNTWVGVMMQRRSMVVAAASLIRGEQLWGLRTWSAHAPLVRKQRERVEETARRAIKSMSLQSLRAAMNSWAAMSEARQRSQQALLSAVSA
Ga0180441_113109	Ga0180441_1131091	F069666	PEPLQQPSFSADAMEAALGLVDVATLAELKGVTRSWRALAQRVLCSRLCRRDGQPVPTRLDQITDLDVEQLIEAGRPGDAAVAGRMLPGLARLHGYGYVVDVAAVRAADLQNGAWDTRRPSFLHGTAKDALKRMHCISGEGEPPLELTIAAVACAGSGIVCGIPVQQMREGGVTVLNLSNKGLQVAAAMLVAYLIPATSVVLKNCNLLKNSLDVKSATMLAKIGAEKGIMLSGMTRDQSLAYFSG
Ga0180441_113309	Ga0180441_1133091	F025010	WARISNVFTKRLDFTYKLEAAGKSKATSYSVVLVRPETEAEFYEMCHLFVMTIVALGLASATIVHKFMDDVVFATVRMKEPFSVAHELLICYFREIDFDPARVLHMGNVFRRGGQDTLLSEARRNAAAFFRTCGANPQLDGAKYPGRDTKNLKSDLKPNGKHDDSSKKPCADFNAGRPCRTLKADGSCAFAHKCNQFVSDKGPLGYCFGPHARCTGCTYADDKKLKSPAK*
Ga0180441_113516	Ga0180441_1135161	F025010	IVHKFMDDVVFATVRMKEPFSVAHELLICYFREIDFDPARFLHMGNVFRRGGQDTLLSEARRNAAAFFRTCGANPQLDGAKYPGCDTKNLKSEIKPNGKHDDSSKKPCADFNAGRPCRTLKADGSCVFAHKCNQFVSDKGPLGYCLGPHARCTGCTYADDKKLKSPAK*