3300014147: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Washington, USA - P5_4mM MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300014147
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0206847 | Ga0180440
• Sample Name: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Washington, USA - P5_4mM MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90288736
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	5
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025010	Metagenome / Metatranscriptome	203	Y
F043264	Metagenome / Metatranscriptome	156	Y
F076927	Metagenome / Metatranscriptome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180440_104293	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	4834
Ga0180440_107279	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1943
Ga0180440_107815	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1744
Ga0180440_108518	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1512
Ga0180440_109763	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1227
Ga0180440_116174	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	612

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180440_104293	Ga0180440_1042931	F043264	VSNGAGLTSATSVSTSAGLTSALANTAVGRIVLAPGNYMLSGQLGVTRSIVLEAAVAGSAVLDAQASSSSQRRVLNINPGPSGVVQLIGLNITGGYIQDPG
Ga0180440_107279	Ga0180440_1072792	F076927	LAWCTMLPCTETSNVPGLNRGLQLAVPSHRRELQTEVSTSADLTSALANTAVSRIVLASGTYNLIAELSITRSVILEAAAGATVTLNAQAINSTSSRRVLNINPGSSGVVQLIGLGITGGYIGGVRAHVQKLPWPQWESC*
Ga0180440_107815	Ga0180440_1078151	F043264	VSTAAGLTSALANTAVGRIVLASGTYYLTAELSITRSVIIEAAAGATVTLNAQAGSSSPRRVLNINPGSSGVVQLIGLNITRGYVSDLFGRYQTG
Ga0180440_108518	Ga0180440_1085181	F043264	VSTTADLTSALANTAVGRIVLASGTYLVSSVEFLITRSVILEAAVAGSVVLDAQGMGGKRVLRINLGSSEFV
Ga0180440_109763	Ga0180440_1097632	F025010	ATIVSKFLDDVVYGAIRMKESWKVAHELLMLYFREIDLDPLRLMHMGNVFRRGGQDTLLSEARRNSAASFRVSGGILQLDGAFDTIKDTKVIKPSGEGDEHSKRPCSDYNAGRPCKKLKPDGTCVFAHKCNQFVSDKGANGYCFGDHVRPDCKYDDAKKLKAPAK*
Ga0180440_116174	Ga0180440_1161741	F025010	KRTDFTFKLEAVGKSKATSHSATLVRPETEAEFYEMSHLFVMTIIALGLASATIVLKFMDDVVFATIRMKETFRVAHELFIIYLREMDFDPARALHMGNVFRRGGQDTLLSEARRNAAASFRTCGGTPQLDGAKKSDAKNPKTDTKPNGKSDDSSKKPCPDFNAGRPCKKLKPDGTCVFAHRCNQFVSDKGPGGYCFGVHARCT