3300014146: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_16mM MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300014146
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0206849 | Ga0180442
• Sample Name: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_16mM MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88400610
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007958	Metagenome / Metatranscriptome	341	Y
F025010	Metagenome / Metatranscriptome	203	Y
F043264	Metagenome / Metatranscriptome	156	Y
F069666	Metagenome / Metatranscriptome	123	Y
F082271	Metagenome / Metatranscriptome	113	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180442_105840	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2710
Ga0180442_109864	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1130
Ga0180442_111612	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	906
Ga0180442_114170	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	690
Ga0180442_114467	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	672
Ga0180442_115169	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	635
Ga0180442_116799	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	558
Ga0180442_117326	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180442_105840	Ga0180442_1058402	F043264	MPNHRRELQTAVSTSAGLLSALANTGVGRIVLDPGTYFLNAELSVTRSVVIEAAVAGSVVLDAQASSSSRRRVLYINPGSLGVVQLIGLNTTRGYVQGVRGCRRDLLIPHRPNGMPC*
Ga0180442_109864	Ga0180442_1098641	F007958	FINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARIIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ*
Ga0180442_111612	Ga0180442_1116121	F082271	RRVRVEQTARRAIKSMSLQSLRAAMNTWVAMSEARQRNQQKLLSAASAFRGDGMRKAWNGWLGLLHDRQVMASAVYCLTHRLQRAGFASWVFAMHGTLKKKKQLRAYMSTLSPAKRSMRKAINSWSEYGHTMWALSRAAAAMRLREERVAFSTWHEHACSDGEREAAMRRAVASMIQSSLRVSLNTWMSYAEEHAEASRVLAGALSSLKPEGRAMRRALNTWAGVMMQRRSMVVAVASLTNSEQLWGLRTWHAHAALVRKRRVRVEQTARRAIKSMSLQSLRAAMNTWVAMSEARQRNQQKL
Ga0180442_114170	Ga0180442_1141702	F043264	VITTAGLTSALANTAVGRIVLAPGTYNLSAELNITRSVVLEAAVAGSVVLNAQASYSSQRRVANINPGPSGVVQVIGLNITGGYVSGFSCNAAG
Ga0180442_114467	Ga0180442_1144671	F069666	SADAMEAALGLVDVATLAELKGVTRSWRALAQRVLCSRLCRRDGQPGPTRLDEITDLDVEQLIEAGRPGDAAVGGRMLPGLARLHGYGHVVDVAAVRAADLQCEMGNSRRPSLLHGAYEVALNSCISGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVKELNLSYRGLHVPAAMLVAYLIPATSVLRRCNLLKNSFDVESATKLAKMGAEKGIMLSGMM
Ga0180442_115169	Ga0180442_1151691	F025010	TIVHKFMDDVVFATVRMKEPFSVAHELLICYFREIDFDPARFLHMGNVFRRGGQDTLLSEARRNAAAFFRTCGANPQLDGAKYPGCDTKNLKSEIKPNGKHDDSSKKPCADFNAGRPCRTLKADGSCVFAHKCNQFVSDKGPLGYCLGPHARCTGCTYADDKKLKSPAK*
Ga0180442_116799	Ga0180442_1167992	F043264	VSNVLGLINALGATSFHRIVLAPGRYALSAALSVTRSVVIEAAVAGSVVLNAQASYWSPRRVLNINPGSLGVVQLIGLNITGGDMDGSGGGVYVQ
Ga0180442_117326	Ga0180442_1173261	F025010	TIVHKFMDDVVFATVRMKEPFSVAHELLICYFREIDFDPARVLHMGNVFRRGGQDTLLSEARRNAAAFFRTCGANPQLDGAKYPGRDTKNLKSDLKPNGKHDDSSKKPCADFNAGRPCRTLKADGSCAFAHKCNQFVSDKGPLGYCFGPHARCTGCTYADDKKLKSPAK*