3300014135: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_043

Overview

Basic Information

• IMG/M Taxon OID: 3300014135
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121296 | Gp0151532 | Ga0134360
• Sample Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_043
• Sequencing Status: Permanent Draft
• Sequencing Center: The George Washington University (GWU)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44811661
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Maryland
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F097527	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134360_100085	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	36024
Ga0134360_101188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4534
Ga0134360_101647	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3581

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134360_100085	Ga0134360_1000853	F071329	MRPIYSKGILMLPVAKIIISGLSSIGAGMIASRLTKPIVSNSRGICKILLWFGSVGTGIAASAIVAREVEKQFDETVKAVKDARDQIEIED*
Ga0134360_101188	Ga0134360_1011887	F097527	MIYFKMEKIGNSTLNKEKKTRSENLVFNTIPAAGVEPARPCGHWILS
Ga0134360_101647	Ga0134360_1016474	F067847	MFTHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIRQYDNIKNFNEWVQSAIDAEDLYTLMEFFDNLIGTSYGERQGDHFVKTPQIKESFLNSPEYEKLFDEFMDNPGLVKQFYEGILPEKIMNQVKRDEKYSEIEEKLKETELKNL*