NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014133

3300014133: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_019



Overview

Basic Information
IMG/M Taxon OID3300014133 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0121296 | Gp0151530 | Ga0134358
Sample NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_019
Sequencing StatusPermanent Draft
Sequencing CenterThe George Washington University (GWU)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size27485950
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Maryland
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063778Metagenome129Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134358_106758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces723Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134358_106758Ga0134358_1067581F063778QLQEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMMAARGYLKSCADQIECAISNIKAIPLDPPPED*

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