3300014123: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - In3P-11 SPAdes reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300014123
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095512 | Gp0123721 | Ga0181474
• Sample Name: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - In3P-11 SPAdes reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12523442
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Oleaceae → Oleeae → Olea → Olea europaea → Olea europaea subsp. europaea	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus → Corallococcus sp. AB038B	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1
Not Available	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: USA: Jet Propulsion Laboratory, Pasadena, California
• Coordinates
  • Lat. (^o): 34.1
  • Long. (^o): -118.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017428	Metagenome	240	Y
F021064	Metagenome / Metatranscriptome	220	Y
F023843	Metagenome / Metatranscriptome	208	Y
F028713	Metagenome / Metatranscriptome	190	Y
F034461	Metagenome / Metatranscriptome	174	Y
F046363	Metagenome / Metatranscriptome	151	Y
F065416	Metagenome / Metatranscriptome	127	Y
F078089	Metagenome	116	Y
F096629	Metagenome / Metatranscriptome	104	Y
F100750	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0181474_100325	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Oleaceae → Oleeae → Olea → Olea europaea → Olea europaea subsp. europaea	6244
Ga0181474_100376	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	5843
Ga0181474_100388	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	5767
Ga0181474_100714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	4259
Ga0181474_100892	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	3655
Ga0181474_101015	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3287
Ga0181474_101094	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus → Corallococcus sp. AB038B	3079
Ga0181474_101514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	2125
Ga0181474_101713	Not Available	1853
Ga0181474_102544	All Organisms → cellular organisms → Eukaryota	1085
Ga0181474_103229	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus → Corallococcus sp. AB038B	790

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181474_100325	Ga0181474_1003256	F078089	MGLTEGKIIEQAYFILLKLEKNKEVLVSNDWGKIGKKT*
Ga0181474_100376	Ga0181474_1003764	F017428	MENQQNIIPMGRLQGVAVDIEAASALVDFEVIEIFNDNNPYLVLLGIDWAIDMNKVINLKKRTMSFERKSLDVVVTPGPAEGSCYTKLVCDYESNDDLDQIYKIMM*
Ga0181474_100388	Ga0181474_1003882	F065416	MSPTRSGYKELGLELVEPLQDKPHKSQRPPMEDENKDEGAGDLIKILLEEALE*
Ga0181474_100714	Ga0181474_1007141	F100750	MEHIEDFQKLNIRVKDIPEEQNINVFIGILKDNIQHEVCLWEHDSFEKAFRLARKRERKISATRKLTTHNYKYGSGVSPTRLTPQQLK
Ga0181474_100892	Ga0181474_1008923	F028713	VSDIIEDKKVLLVKVDSLKNNADALTKFVSFEKFSWCRETMGIAGLDK*
Ga0181474_101015	Ga0181474_1010152	F023843	MENNGKIEIDKFNGKFFELWKLKMEYMLVNRDQWIIVDLGMPPTRMST*
Ga0181474_101094	Ga0181474_1010942	F017428	MGRLQGVIVDIEGVSTQEDFEVIEIVNDSNPYPALLGIDWATIMNGVINMKKRKMIFEKKSPSVVVLLDLAKGVRHIELVHDDDSDDDLDCIYKITA*
Ga0181474_101398	Ga0181474_1013985	F096629	MPRGKKMQTPSKEPEISSMTREKEEEMQHDISKLQDHVQQLSLTQKGT*
Ga0181474_101514	Ga0181474_1015142	F100750	VEHLEDFQKLNIRVNDIPEEHRIDAFIRTLKDNIQHEVLLWEPNSLDKEFMVERKTERKIMETRKPTIRNYKYGIVFLLAFHNL*
Ga0181474_101713	Ga0181474_1017132	F034461	MLGYDFEIIYKKGKQNVVADALSRKDEDVEALLCAISIIQPEWINKTWYEWKCWK*
Ga0181474_102108	Ga0181474_1021082	F021064	TKKAILLKGLNCIPLLLLKSVKGIANKIKMAENIAITPNNLLGIDLNIA*
Ga0181474_102544	Ga0181474_1025441	F046363	MVLDAMVFRSMVLDALACINMYCNIERKIMKNQAGSPGFGIQGKISVHMCFMGYALALFIFFV*
Ga0181474_103229	Ga0181474_1032292	F017428	GASALEDFEVIEIVDDNNPYAALLGIDWATNMNGVINLKKHKMIFKKKYLCVVLPLDLVEGSNYTKPVRDYESDDNLDYIYKITA*