3300014121: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In4 SAF170 SPAdes reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300014121
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095512 | Gp0111874 | Ga0181457
• Sample Name: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In4 SAF170 SPAdes reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9462769
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1
Not Available	3
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: USA: Jet Propulsion Laboratory, Pasadena, California
• Coordinates
  • Lat. (^o): 34.1
  • Long. (^o): -118.1
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000313	Metagenome / Metatranscriptome	1323	Y
F001245	Metagenome / Metatranscriptome	737	Y
F005526	Metagenome / Metatranscriptome	397	Y
F056731	Metagenome / Metatranscriptome	137	Y
F058758	Metagenome / Metatranscriptome	134	Y
F090646	Metagenome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0181457_10292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	5720
Ga0181457_10326	Not Available	5394
Ga0181457_11398	Not Available	1315
Ga0181457_12490	Not Available	729
Ga0181457_13430	All Organisms → cellular organisms → Bacteria	553

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181457_10292	Ga0181457_102923	F001245	MRKQILGNPAPYVEVRAAAISVGLDPGGSECRALVDELLRAGHLQRYPSSSLTAHGLYRLTDSGIVAADEAALLEARRRAQLTDEREQ*
Ga0181457_10292	Ga0181457_102924	F005526	MRYVHPADRLRPWFGVAVGLAALVGMLAFGILGRNFGTLKHLKALNDAGAWLTISLIEASAGILALLLAAVALGERIERGVEGPHFISLIRLTARGGFATIAPAVIFDVLKVTTTSVVQEGWLITALVVVQVALLAATIGAFAFMLSCLWATLKVTFVGVPESTPEENEAEESPDARS*
Ga0181457_10326	Ga0181457_103262	F090646	MANREQRSNKEKKKPKADKKGAAPAAGGIKAPAYVEPQLIRKPHKGKDWT*
Ga0181457_11398	Ga0181457_113983	F000313	MPKTSEQWLLFKYVDGEFTPLSKPFKSKEQAEKARLKYPERERKKIGIGVIRTQS*
Ga0181457_12490	Ga0181457_124901	F056731	MEILVDKIIIERHPSKIDTDGRRHYIIRAIPYQDPQQEAERLKAVHEARVKIVPRV*
Ga0181457_13430	Ga0181457_134301	F058758	ARRGILKECIAGRGETEYARALMTLPDFILEREN*