3300014026: Human oral microbial communities from Los Angeles, CA, USA - S17-03-R

Overview

Basic Information

• IMG/M Taxon OID: 3300014026
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134637 | Ga0119807
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S17-03-R
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 199400361
• Sequencing Scaffolds: 10
• Novel Protein Genes: 14
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F040149	Metagenome	162	N
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F055792	Metagenome	138	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F084362	Metagenome	112	N
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119807_1000283	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	70225
Ga0119807_1000317	All Organisms → cellular organisms → Bacteria	64317
Ga0119807_1000603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	40221
Ga0119807_1000697	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	36196
Ga0119807_1000896	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	29642
Ga0119807_1000899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	29512
Ga0119807_1001443	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	20072
Ga0119807_1002333	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	13045
Ga0119807_1014048	Not Available	2081
Ga0119807_1037104	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	748

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119807_1000283	Ga0119807_100028327	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLFASPLKSGHTPGHKLRTRDWVKVDYSDRNNIIVRKVGGSLIIENRFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALRELKKYKLPRTKRFSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYDHPEACIIH*
Ga0119807_1000283	Ga0119807_100028328	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRHTSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYIDYDHPEAHMIH*
Ga0119807_1000283	Ga0119807_100028329	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLFASPLRPAKTRGSKKRTRDWVKVDFSDENNIIIVNVGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPMALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH*
Ga0119807_1000317	Ga0119807_100031789	F084362	MNCTFTVRWSDDKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSETEAGQKGFWWEK*
Ga0119807_1000603	Ga0119807_10006033	F046431	MKKISRIGITIILILSIIISYGSVIISRAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGLNNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR*
Ga0119807_1000697	Ga0119807_10006973	F077403	MDTIMPLLRRFVLIILLLSAVRAIHAEERVSVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPRWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM*
Ga0119807_1000896	Ga0119807_100089615	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARTIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENEI*
Ga0119807_1000896	Ga0119807_100089616	F022002	MKNIYSPSFRSMSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEGGTHAGSNDVSYTVTGLNYARRPTQSVCMSFYKGHLRRISFIFDDLDVLEQIESELEDKYGTMAEGVGTSNMKSKVVFDAFTRLLVVRGFKHEGYFGFKDAYIIYSDEELDRARSAEKKSEI*
Ga0119807_1000899	Ga0119807_10008996	F046431	MLKKVIQKGVKVILIMTMVLSMIIAYSNTIISNAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGASSFETIGLTDFSNVDEEVKVLNVYPVPTAVYNTPNVQVTYLDGSSEVIPKTALLKVWMEGRNSKRRWKYN*
Ga0119807_1001443	Ga0119807_100144312	F040149	VADEGAEELRWEVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLSPVWNHDSEDAIDHFIYDASVPKGHALTAVRE*
Ga0119807_1001443	Ga0119807_100144313	F055792	MEIASQALDSTSAVAHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLEPRIIGKAMKPIALPHVARLDEGIPLQRIGXXXXLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA*
Ga0119807_1002333	Ga0119807_10023332	F046432	MQMSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFRVIENQTTHQKYLLMNTYSHHGVESELEYYREEGFSNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS*
Ga0119807_1014048	Ga0119807_10140482	F084362	MNCAFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRDVDVAVKINNKPAGSLQDSEKQPEAAAEQKGFWWEK*
Ga0119807_1037104	Ga0119807_10371042	F101358	PKRQDVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIDRLEKCVPLAVLQEQNIDFTNAYLQKAYGVMEKDGKLQPVADTTHATHQNDSTDEQETEVMPAQGGDTYEHLSGGSARQLVGSVAAKASDGEVDNSPLVERVPGRVE*