3300013947: Baboon gut microbial communities from fecal samples in Kenya - M13

Overview

Basic Information

• IMG/M Taxon OID: 3300013947
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118445 | Gp0134453 | Ga0116653
• Sample Name: Baboon gut microbial communities from fecal samples in Kenya - M13
• Sequencing Status: Permanent Draft
• Sequencing Center: Duke University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 147843505
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctjsp22	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Baboon Gut Microbial Communities From Fecal Samples In Kenya
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Coordinates
  • Lat. (^o): 2.717
  • Long. (^o): 37.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F036964	Metagenome / Metatranscriptome	169	Y
F042737	Metagenome / Metatranscriptome	157	Y
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116653_1000002	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	259863
Ga0116653_1005398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2787
Ga0116653_1005966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2571
Ga0116653_1013900	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1359
Ga0116653_1033002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	770
Ga0116653_1037444	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctjsp22	712
Ga0116653_1039724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	686
Ga0116653_1040561	Not Available	677
Ga0116653_1056439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116653_1000002	Ga0116653_1000002188	F036964	MDLLRIIFPIMMVVGALGSLVVNIIQKGDWPTSLQWLGAMLLYTALTFRNVRG*
Ga0116653_1005398	Ga0116653_10053982	F092227	MNEEKRKRFLRIGCLLLAGVFLLSVVGSVLLMLLA*
Ga0116653_1005966	Ga0116653_10059662	F092227	MNEEKRKRFLRLGCLLLAGVFLLSVLGSVVLMLLV*
Ga0116653_1013900	Ga0116653_10139001	F036964	MLKIVFPLLMVIGAFGSLVESVISGCRFDATSLQWLGAMLLYTALTIRNVR*
Ga0116653_1033002	Ga0116653_10330021	F013656	MSKIYKEPNKSETETTINVLYSENMLSICTNKVDLQKQLNKLIGEPTKEYKIKRSIAGSTWNISLDDKAKIQKIILKANIYSI*
Ga0116653_1037444	Ga0116653_10374443	F036964	MELLRIIFPIMMVIGALGSLVVNIIQKGDWPTSLQWL
Ga0116653_1039724	Ga0116653_10397242	F092227	MNEQKRKRVLRIGCLILAGVFALSLLGSVVVMLLA*
Ga0116653_1040561	Ga0116653_10405612	F042737	MKLTEKSQGVFDYIKENGGKVTIDELVAALDRPARSINANVTDLAKKGLVEREKVAGEGEDAKDITYAVLTAEGKTFVPSEDEE*
Ga0116653_1056439	Ga0116653_10564392	F092227	MNEQKHKRWLRIGCLLLAGVFALSLLGSVIMMLLY*