3300013942: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 150

Overview

Basic Information

• IMG/M Taxon OID: 3300013942
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118643 | Gp0137834 | Ga0117795
• Sample Name: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 150
• Sequencing Status: Permanent Draft
• Sequencing Center: Chalmers University of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 122511938
• Sequencing Scaffolds: 18
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ctUT63	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F032312	Metagenome / Metatranscriptome	180	N
F042095	Metagenome	159	N
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F044555	Metagenome / Metatranscriptome	154	N
F051935	Metagenome	143	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F076064	Metagenome	118	N
F078006	Metagenome	117	N
F080163	Metagenome	115	N
F083451	Metagenome	113	N
F087334	Metagenome	110	N
F087335	Metagenome	110	N
F089054	Metagenome	109	N
F089590	Metagenome	109	N
F090513	Metagenome	108	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117795_1000153	All Organisms → cellular organisms → Bacteria	28625
Ga0117795_1000239	All Organisms → cellular organisms → Bacteria	20349
Ga0117795_1001289	All Organisms → cellular organisms → Bacteria	5387
Ga0117795_1003014	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	3121
Ga0117795_1003121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	3054
Ga0117795_1009035	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ctUT63	1632
Ga0117795_1010740	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1474
Ga0117795_1011820	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1395
Ga0117795_1013436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1288
Ga0117795_1013798	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1268
Ga0117795_1017187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1115
Ga0117795_1017587	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1099
Ga0117795_1023997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	917
Ga0117795_1028456	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	830
Ga0117795_1030767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	792
Ga0117795_1037402	Not Available	704
Ga0117795_1050887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	582
Ga0117795_1056611	Not Available	542

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117795_1000153	Ga0117795_10001534	F080163	MKTIKFLQESFETKERFQQEISIKYSYNLDIVESIDFRINQRNIRYFYEAMQNFENSLVNELKEKKNNFCDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHGDLSFSTKLESEVLNSEIELLQEKLNLIREEICELIGVNPNLEKQGHEDNYVFNLNIDSDNQIGFFLQATEL*
Ga0117795_1000153	Ga0117795_10001536	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCKIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0117795_1000153	Ga0117795_10001537	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0117795_1000239	Ga0117795_100023928	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEKILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0117795_1000239	Ga0117795_100023930	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQRLALSAMISKQDGFAIYSFLFQTPDTSNSAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0117795_1000239	Ga0117795_100023936	F044555	MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0117795_1001289	Ga0117795_100128911	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELRPYLRYPNQRINNNHLHSEFIRLRLREILQINLSDITIIDIIPLP*
Ga0117795_1003014	Ga0117795_10030143	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNEAKRPPKPALKFY*
Ga0117795_1003121	Ga0117795_10031215	F026592	ASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*
Ga0117795_1009035	Ga0117795_10090351	F042095	RNYYTDDYNYVPDPVVGNPHNTFVEFSSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDDIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLSMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIQPGPSDMWNYFDINTLPFFEVDKINPNITNFVFLKDWVSGERRTGWNDDNMSGRGLDHRTSFSVYHSNSIRVDKLPDYIYEMRSIARFEMNCSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYESQYPDENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0117795_1010740	Ga0117795_10107402	F058555	LICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHRASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRWMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDVFLGVKGSEMSKAG*
Ga0117795_1011820	Ga0117795_10118203	F078006	MGDNILRKAADELKKTGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI*
Ga0117795_1013436	Ga0117795_10134363	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD*
Ga0117795_1013798	Ga0117795_10137982	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGTLTPPYLGKVYFRSRLRGKG*
Ga0117795_1017187	Ga0117795_10171871	F051935	MKEEKRMKRLLGLLMAVMVMMGGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLIVRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIFFDFVDENQKRWELMLNLGDGYVSSFDAISYYVEGYGTTYINMNYDRGLEFLIDAPAYSRLSYEVYPVEDYSFGVEDFDLATCPLSMQEFLVSAIVTCGEEGAGLYIMVQQDAQPTVMLTDGDTIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE*
Ga0117795_1017587	Ga0117795_10175873	F083451	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM*
Ga0117795_1023997	Ga0117795_10239971	F032286	WPPMEKWFCKVVPPVRHRALIFDVRLFTGNTDDDALVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTGQKTFSPFSLDLIFTFDFAALSECRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI*
Ga0117795_1028456	Ga0117795_10284561	F057001	MPIQAPRVRANLMTNKELNKVQNEVKKSNEKTLTGAVKTWCNLFKSGKEINDILKENDIKVSREVVPALVALAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKNDQDKNKKLKMNEIEDIAILGSSHKRFGYNEPIEFDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNDR*
Ga0117795_1030767	Ga0117795_10307671	F090513	MLKIFAMAKYVRKMEWKLLHIKHILYMQPFGALKIVPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY*
Ga0117795_1037402	Ga0117795_10374021	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS*
Ga0117795_1050887	Ga0117795_10508872	F087334	MASRYPFVGAAAHLFPTNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRTASLFEYREKHP*
Ga0117795_1056611	Ga0117795_10566111	F044554	FIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*