3300013914: Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PAB003

Overview

Basic Information

• IMG/M Taxon OID: 3300013914
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118444 | Gp0135629 | Ga0121410
• Sample Name: Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PAB003
• Sequencing Status: Permanent Draft
• Sequencing Center: Weill Cornell Medical College
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13397766
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → City → Subway → Unclassified → City Subway Metal → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA:New York City
• Coordinates
  • Lat. (^o): 40.7
  • Long. (^o): -74.01
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021064	Metagenome / Metatranscriptome	220	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0121410_11368	Not Available	776

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0121410_11368	Ga0121410_113682	F021064	LNCKPLLLPKSVNGITNNINIAANIAITPSNLLGIDLNIA*