3300013902: Baboon gut microbial communities from fecal samples in Kenya - F11

Overview

Basic Information

• IMG/M Taxon OID: 3300013902
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118445 | Gp0134420 | Ga0116620
• Sample Name: Baboon gut microbial communities from fecal samples in Kenya - F11
• Sequencing Status: Permanent Draft
• Sequencing Center: Duke University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 95218814
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea formicigenerans	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Baboon Gut Microbial Communities From Fecal Samples In Kenya
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Coordinates
  • Lat. (^o): 2.717
  • Long. (^o): 37.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056682	Metagenome	137	Y
F067844	Metagenome	125	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116620_1001472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea formicigenerans	5273
Ga0116620_1010222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1182

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116620_1001472	Ga0116620_10014724	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSYLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0116620_1010222	Ga0116620_10102222	F056682	MKTQSRAGKVANQPIGQGKMYSASFSAFPSKNRTIFPIQELRKIHENQEVL*